Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02229 ATGTTACAGAAAGTTGTAAAACACatttttgatgttgttgttgcaGCTGATGGTACCGGAAATTTCACCAAGGCGATGGATGTTGTGAATGCAGCTCCTAAATCAAACATAAAGCGCTATTGTCATACTCGTAAAAAGGGTGTGTACATGGAGAATGTTGAGGTTGACAAGAAGAAACTCGCAATGATCAGAGAAATCAACCTCAACATTTTTGGGAAGACCATGGAAGCCATTTTCAACAACGGTGTTTATACAATCTTACATAAGTGA 270 0.3593 MLQKVVKHIFDVVVAADGTGNFTKAMDVVNAAPKSNIKRYCHTRKKGVYMENVEVDKKKLAMIREINLNIFGKTMEAIFNNGVYTILHK 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02229 89 Pfam Pectinesterase 11 62 IPR000070 GO:0030599|GO:0042545
Tsu08g02229 89 Gene3D - 7 82 IPR012334 -
Tsu08g02229 89 SUPERFAMILY Pectin lyase-like 11 60 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02229 Tsu-Chr8 30557846 30558115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02229 1 59 Carbohydrate Esterase AT3G43270 55.932 8.76e-14 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02229 K01051 - gmx:100777500 68.9366