Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02204 aTGGCAGGAATGCTTCCAGGAGTTGAATCTGCTAGAAGGAGACATGTCCATAAAGGAGTTGGATTTTCAGATTCACCATCTGTAACTTCTCATAATACCTCAAGACGATCTGGTTTCTGTTTGTATACAAGTAACCATGAATCTCGACCTTCctctttctcttcctcttcGTCTTCAATGcaaagaaatatattttatcagaCGCACCAAGATGAGAATATGGTTGGAGCAGCTAGAGAAGCCAAACAGAGATTAGATGACAAATTCAGATCACAAAGGGTGTCCGAAAACACAAGGCAAAAGAACATAAAATGTGTGGAGGGTAGAAAAGAAAGCATAGAAGAGTTACAAATTGAGGTATATGGGTCAAAGAAAAGCGGTCCAAGGAAGTTCAGTTGGAGCAAATTGAGCTGGAAAGCATCAGAACAAGATGATTGTGCTGTGTGTTTGGAATCATTTAAGATTGGTGAGAAATTGATTCCTCTCCCTTGTGCACACAAATTCCATTCCACATGCTTGAAACCTTGGTTACAAAATAATTCACACTGTCCATGCTGTAGAACTACCATTCTTTCCCTCTAG 582 0.3763 MAGMLPGVESARRRHVHKGVGFSDSPSVTSHNTSRRSGFCLYTSNHESRPSSFSSSSSSMQRNIFYQTHQDENMVGAAREAKQRLDDKFRSQRVSENTRQKNIKCVEGRKESIEELQIEVYGSKKSGPRKFSWSKLSWKASEQDDCAVCLESFKIGEKLIPLPCAHKFHSTCLKPWLQNNSHCPCCRTTILSL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02204 193 SMART ring_2 146 186 IPR001841 -
Tsu08g02204 193 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 189 - -
Tsu08g02204 193 MobiDBLite consensus disorder prediction 1 36 - -
Tsu08g02204 193 SUPERFAMILY RING/U-box 135 191 - -
Tsu08g02204 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 192 IPR013083 -
Tsu08g02204 193 ProSiteProfiles Zinc finger RING-type profile. 146 187 IPR001841 -
Tsu08g02204 193 Pfam Ring finger domain 144 187 IPR001841 -
Tsu08g02204 193 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 189 - -
Tsu08g02204 193 CDD RING-H2_PA-TM-RING 145 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02204 Tsu-Chr8 30179342 30180459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02204 1 90 C3H Transcription Factor Family AT2G15580 48.958 2.69e-18 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02204 - - gmx:100527583 265.003