Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02198 ATGCAAACTTACATAAGTGATGTTTTGAATCAAGGAGGGTGGTTGGAGTGGAATGGGTCACAGTATTTGGATACACTATATTATGCAGAATACAATAACTTTGGACCAGGAGCAGACCTAAGAAACCGTGTGAAATGGTCGGGCGGCTGCCATGTATTGAATGATTCTACTCAGACTCGTATCTTCACACTCGCCCAATTCATTTTGGGGATCAATGGTTACCTTCGACAGGCGTACCGTTTATCAGTGGATTTTAGGGGATCAAAACAATACATTGGGGAAATtagcattaGATCCAAATCGTTTCCGCTATCCACCATATTGTCGCGTGTAGCTCCTCCGCCACCGGGAGATCCTTCCACTTATCCTTCCAATCCTTTCTATGTTCATCCCAGTGACGGTCCTTCCTCCGTCAAGGCAGGGATGGTTGGCGGCCCTGGACCTCCAAGAAGTCAGTCTGCGAAATTCAAAGCTGACATGCTTATTGGGGGCTCCAGGCCGCCAAGAAGCATTCCTTGCGAACGTTTATTTGTGGGTCTTGGGTCACCAAGAAGCCATtggccGCTTCTCGACGGTGCCAATTATCATTCTTGGGCGCGTTCTATGCGTCGTGCCCTAGGTTCCAAGCTCAAATTCGAATTCCTCGACGGTTCGATTCTGATGCCGCTTGATGCTTTCGATCCGCCGTTTCGAGCGTGGAATCGCTGTAATATGTTAACTCACAGTTGGCTTATCAATTTCGTTGAATCATCAATTGCTCGTTCTATCGTGTTCATGGACAATGCTTCTAATGTTTGGCTCGATTTGAAGGAACGTTTTTCGTAA 825 0.4606 MQTYISDVLNQGGWLEWNGSQYLDTLYYAEYNNFGPGADLRNRVKWSGGCHVLNDSTQTRIFTLAQFILGINGYLRQAYRLSVDFRGSKQYIGEISIRSKSFPLSTILSRVAPPPPGDPSTYPSNPFYVHPSDGPSSVKAGMVGGPGPPRSQSAKFKADMLIGGSRPPRSIPCERLFVGLGSPRSHWPLLDGANYHSWARSMRRALGSKLKFEFLDGSILMPLDAFDPPFRAWNRCNMLTHSWLINFVESSIARSIVFMDNASNVWLDLKERFS 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02198 274 MobiDBLite consensus disorder prediction 109 128 - -
Tsu08g02198 274 Pfam Pectinesterase 1 70 IPR000070 GO:0030599|GO:0042545
Tsu08g02198 274 Pfam gag-polypeptide of LTR copia-type 188 222 IPR029472 -
Tsu08g02198 274 Gene3D - 1 80 IPR012334 -
Tsu08g02198 274 SUPERFAMILY Pectin lyase-like 1 62 IPR011050 -
Tsu08g02198 274 PANTHER - 188 274 - -
Tsu08g02198 274 PANTHER - 188 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02198 Tsu-Chr8 30063291 30066020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02198 1 70 Carbohydrate Esterase AT3G43270 60.000 4.83e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02198 - K01051 gmx:100783177 182.57