Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02186 ATGGTAATTGTGCTGCTTCTGCATCATCCTGATCATCAAACATGTGATGCAGCAATTACTAATAATCAAACATATTGTGCCCCTTCTTCATGCGGTAAAATCAGCAACATAAAACATCCGTTTCGACTTAAAGATGATCCAATAAGCTGTGGTGATCCAAGGTCCGAATTATCCTGCGAAAACGACATAACAACCTTAAATCTGTCTTCGGGTAAATACTATGTGAAATCAATCAACTATGAAAACTACACAATAAGATTAGTGGATCCTGGAATTGAAGAGAGTGATTGCTCTAATATTCCTCGGTATTTCTTAACCtcatatgattatgattataacAACGACGGGAATCCATATGAAATGAGTTATCCAGCTTGGTTGGGGGATATAATATACTTGAACTGTAGCAAGGCAGTGAAGAACGACTCTAGGTATGTGGATACATCTCCGTGTATAATCAACTCAACTGGTGGCCATATCTATGCTATCGTTGGAGACTTGAATGCTGGGAGATTAAACGTCGATTGCCGCGTGAAGCTTGTTGCTACAACGTCAGCTCCTGCTTTTAAGCCTGCTGATATCTATAGAGATGTAAGCactcaaaaacatttttcctatGCGGAAATTCATGAAATGCTAAGCTATGGATTTTACCTTTCGTGGTTGAGACGTGCTTGTCAAGATTCTTGTGATACTGACCAACAATACTGCAACTTCGATGAAAGATACGGAGGTCTTTCTTGTACATCCAATTTTTGCAGGACTCCATTGGGACTTGAAATCCAATGTGtaCACATGACAAAGCTACGCATATGGATGGAAGATTTGATACTTGGCATTGTTAAAGGAGTACTACGAATAATTGGAACGACAAAAAGCTCAAGATTAGCCAAGGGATTTTCCGATTCTGAAATTGTCATCGAGATAGGAAGAGTCAGTGGCCGGTATCTCATGCCATCATTTACCGTGAGATTTACATTGGGCCTCATGATTTTCTTTGTGCTATTAATATATACATGTCGAAGAAGACATGTCTCAATTTACGATAATATTGAAGTTTTTCTCAGTGGGAACACCTTGATGCCAATAAGGTATTCATACAAAGATATCAAGAAGATGACTTTAAGTTTCAAGGACAAGCTTGGTCAAGGCGGCTTTGGTTCTGTTTATAAAGGAAAGTTAAGAAGTGGGTCATTTGTTGCTATAAAGATGTTGGGTAAACCTAAGGGTAATGGACAAGATTTCATTAGTGAAGTCGCAACTATAGGAAGAATACATCATGCTAATGTGGTGAGACTTATAGGATTTTGTGTTGAGAGGTCAAAACGTGCTCTTGTTTATGAATTCATGCCCAACAGCTCTCTTGATAAATATATTTCCTCTAAAGAGGGTGGTATCTCCCTAACATATAAGAAAATGTACGAGATATCTCTTGGAGTGGCTCGTGGAATTACTTATTTGCATCAAGGTTGTGACATGCAAATCTTGCATTTTGATATCAAACCCCACAACATCCTTCTTGATGAGAACTTTATCCCCAAAGTTTCAGACTTTGGTCTTGCAAAACTTTATCCTAATGACAATAGTATCGTAACTTTAACCGCAGCAAGAGGAACAATTGGTTACATGGCGCCTGAATTATTCTACAAAAATATTGGAGGAGTATCCCATAAGGCTGATGTCTATAGTTTTGGAATGCTTTTGATGGAAATGGcaagtaaaaaaagaaatttgaatcCACATGTGGATCGTTCAAGCCAACTTTTCTTTCCCTATTGGATTTATAATCAATTGATTGAAGAAAGGGAAATAGAAATGGATGGAATtacaaatgaagaaaaaaataatgtgaaGAAGATGTTCATAATTGCGTTATGGTGTATACAATTGAAACCAAGTGATCGTCCTCCAATGAACAAAGTGATAGAGATGCTTGAAGGAGGTATTGAGAATATTGAAATGCCTCCGGCGCCTTCTTTATATCTAGAtgaaatgattcaagaagatCTTGAAGGCAACACTGATGAATTTGATGAATCGTGTTCTACTTTTGGCTCTGTTAGTTTTATTGAAGAAACGACAACAAAGCCTTTATTAATGAATTCTGATTAA 2112 0.3608 MVIVLLLHHPDHQTCDAAITNNQTYCAPSSCGKISNIKHPFRLKDDPISCGDPRSELSCENDITTLNLSSGKYYVKSINYENYTIRLVDPGIEESDCSNIPRYFLTSYDYDYNNDGNPYEMSYPAWLGDIIYLNCSKAVKNDSRYVDTSPCIINSTGGHIYAIVGDLNAGRLNVDCRVKLVATTSAPAFKPADIYRDVSTQKHFSYAEIHEMLSYGFYLSWLRRACQDSCDTDQQYCNFDERYGGLSCTSNFCRTPLGLEIQCVHMTKLRIWMEDLILGIVKGVLRIIGTTKSSRLAKGFSDSEIVIEIGRVSGRYLMPSFTVRFTLGLMIFFVLLIYTCRRRHVSIYDNIEVFLSGNTLMPIRYSYKDIKKMTLSFKDKLGQGGFGSVYKGKLRSGSFVAIKMLGKPKGNGQDFISEVATIGRIHHANVVRLIGFCVERSKRALVYEFMPNSSLDKYISSKEGGISLTYKKMYEISLGVARGITYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPNDNSIVTLTAARGTIGYMAPELFYKNIGGVSHKADVYSFGMLLMEMASKKRNLNPHVDRSSQLFFPYWIYNQLIEEREIEMDGITNEEKNNVKKMFIIALWCIQLKPSDRPPMNKVIEMLEGGIENIEMPPAPSLYLDEMIQEDLEGNTDEFDESCSTFGSVSFIEETTTKPLLMNSD 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02186 703 Pfam Wall-associated receptor kinase galacturonan-binding 26 89 IPR025287 GO:0030247
Tsu08g02186 703 Gene3D Transferase(Phosphotransferase) domain 1 450 654 - -
Tsu08g02186 703 ProSitePatterns Protein kinases ATP-binding region signature. 381 403 IPR017441 GO:0005524
Tsu08g02186 703 Pfam Protein tyrosine and serine/threonine kinase 375 645 IPR001245 GO:0004672|GO:0006468
Tsu08g02186 703 ProSiteProfiles Protein kinase domain profile. 375 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02186 703 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 12 674 - -
Tsu08g02186 703 SMART serkin_6 375 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02186 703 Gene3D Phosphorylase Kinase; domain 1 355 449 - -
Tsu08g02186 703 SUPERFAMILY Protein kinase-like (PK-like) 363 645 IPR011009 -
Tsu08g02186 703 PANTHER RUST RESISTANCE KINASE LR10-RELATED 12 674 IPR045874 GO:0004672
Tsu08g02186 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02186 Tsu-Chr8 29687668 29699061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02186 364 702 Receptor kinase-like Gene Family AT5G38280 49.711 6.84e-108 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu08g02186 PK_Tyr_Ser-Thr 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02186 - - mtr:MTR_1g027830 894.034