Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02172 ATGGGCCGTGCAAAAATAGCTATGAAATATATCAAAAAGGAGAAATCTCGCAAACTAGCTTTCAATCAGAGAACAACTGGATTAAAGAGTAAAATTACTGAATTTTGTAAGTCCGGGGCAAAAGCATGCTTGATTGTGtacaatgatgatgataattttggAATGATGACATGGCCAAAAGATCAAACAACTGTAAAATCTTTGCTTCAAGAATATGAGCATCAAAAGATTGAAACACCTCCTAAGATATTTGATGTCAAAGActactttaaaattaaaaaagataaagctGAAGTTGCGATTATCAAAGTGCGCAAAGATATCCTCAAGAAGAAGTATCCAACTTGGCATccaaatttcaataaaatggaagagaaaaatcttttttctttcattacTAGCATAGAGGAAAAGATTGAAGCTTGTAATGGAAAAATTAGCATGCTTAAAGATATGCGACAAAGTGACTCTAATTTATTGCAAAACACTCCTCACATGCAAATGATGGTACAAGCTGAGAATGTTACCATACCTCAAATGCAACAACAAATTCATGCTCCTATGAAGTCAATTGATTATATTAGTGAAATGATGGTACAGGATGAGAATGTTACAATACCTCAAATGCACCAAAACATTTATGCTCCTATGAAGTCAATTGATAATATTAGTGAGATGGTGGTTCAAGCTGAGAATGTTATCATACCTCAGATGCAACAACAAATTCATGCTCCTATTATGAAGtcaattaattatattagtGAGATGATGATACATGAAAATGTTGCCATACATCAAATGCAACAACAAATTCAAGCTCCTATGAAGTCAATTGATGATATTAGTGAGATGATGGTACAAGAGAATGTTTCCATACCTCAAATGCAACAACAGATTCATCCTCATGTGAAGCCAATTGATTACATTGATGAGATGATGAATTTCACCGATCTTGTTGATTTTCCTTATATTTCATCAACAAAGCAACTTGGTCAACTTGTGGAGTGCGGTAATCAAGTGGTTAATCATGATGACTCTTTGGCTACTCAACTTGCTGATCCTATTGATTGGACTAATTATCTTGATCCTGATATTTTCAACTGGCGATTCCAACAATTTTCATCTCAGCGACCATCAATTTACAAATCGGAATCTCGCATATTGAAATCGCTCTCAGATTTTTCCGTTCCGACACCTCTTGAGCCTGagattgaaattgattttactAAGAATGAAACAGGAGGCCAGCCTCCTACTGCTCCTTTGGCTCATCAGATGAGTTTGCTGAATACTACGGCTGAATACAACAGATTAATGTTTTTTATGAAAAGCATAATTGGTATGCCATTGAAGTGA 1356 0.3267 MGRAKIAMKYIKKEKSRKLAFNQRTTGLKSKITEFCKSGAKACLIVYNDDDNFGMMTWPKDQTTVKSLLQEYEHQKIETPPKIFDVKDYFKIKKDKAEVAIIKVRKDILKKKYPTWHPNFNKMEEKNLFSFITSIEEKIEACNGKISMLKDMRQSDSNLLQNTPHMQMMVQAENVTIPQMQQQIHAPMKSIDYISEMMVQDENVTIPQMHQNIYAPMKSIDNISEMVVQAENVIIPQMQQQIHAPIMKSINYISEMMIHENVAIHQMQQQIQAPMKSIDDISEMMVQENVSIPQMQQQIHPHVKPIDYIDEMMNFTDLVDFPYISSTKQLGQLVECGNQVVNHDDSLATQLADPIDWTNYLDPDIFNWRFQQFSSQRPSIYKSESRILKSLSDFSVPTPLEPEIEIDFTKNETGGQPPTAPLAHQMSLLNTTAEYNRLMFFMKSIIGMPLK 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02172 451 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Tsu08g02172 451 PANTHER PROTEIN, PUTATIVE-RELATED 3 273 - -
Tsu08g02172 451 PANTHER MADS BOX PROTEIN 3 273 - -
Tsu08g02172 451 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Tsu08g02172 451 ProSiteProfiles MADS-box domain profile. 1 35 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02172 Tsu-Chr8 29470237 29477336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02172 1 253 Type I MADS-box Gene Family AT5G55690 22.692 8.35e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02172 - - cam:101509886 220.705