Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02157 ATGGGGAGGAAAAAGAAGCAAGTAGGAGAAACAGGTGAAGAAAATGGGAATCATAATAAGGTCGAGGATAAAAGCTCGAATGCGTATGATAATGATACTATCATATTTATAAGTAAGGCTCAAGAGTTGAAAGAAGAAGGAAACAGGATGTTCCAAAAGAGGGATCTTCAAGGAGCTATGGTAAAGTATGAGAAAGCACTCAAATTGCTTCCGACAAATCATATTGATGTGTCGTATGTGCGGAGTAACATCGCTGCATGCTATATGCAGATGGGACTAGGTGAGTATCCTAGGGCGATAAATGAATGTAATTTAGCTCTTGAAGTTACTCCGAAATACAGTATAGCTTTGTTGAAGAGAGCGAGGTGCTATGAGGCTTTGAATAGACTGGATTTAGCATTGGGAGATGTTAGTGCTGTTTTGAGTATGGAGCCGAATAATATTATGGCGTTGGAGATCTCGGGTAAGGTGAAAAGTGCACTTGAAGATAGAGGGTTAAGAGTGAACGATGCACAAATTGAGTTGCCTCCAGATTATGTCGAACCTCCTTTTGCTGTGCCTACTGAAAAGGTAGCGAAAGAAAAGAaacacaagaagaagaagagcaaAAAAGAGAAGGTCACGGCTACTGATGAAATTGTAGCGAAGCAAGCTGAGGAGAAACTTGAAGAGAAGAAAGACGAGGACAATATTGAAGCAATTGAGGCGGAGGGCAATcacaaagataaaaaaaaggctaataaatctaaaaagaaGGCGGCcaaggaaaaaaaagataaaaagaaagatgatgtTAAAGAGGTCAATGCTGAAAAATGTAACGGTAGAAGTGAAGATGTACCTAAGAAAACAGCAAAACTTGTTTTTGGCGATGATATAAGATGGGCTCAATTGCCGGTTAATTGCAGCCTCTTTCAGCTAAGAGAAGTTATTTGTGACCGGTTCCCAAGCTTAGGAGCAGTTCTTGTCAAATATAGAGATCAAGAAGGTGATTTGATCACAATCACTTCTGATGAAGAATTGAAGTGGGCTGAAACGGGATCACAGGGTTCTATCCGACTGTATATAGTAGAAGCTAATCCTAACCACGACCCATTCTATGAGAAACTTCATGTGAAGGATGTTGAAATTGATAATGCTGCTATGAATGGTTGCATGATGAAATCAAAGGAAATTATTATCTCATCTTGTGTTGAGGATTGGGTAATTCAGTTTGCACAATTGTTCAAGAGCCACGTTGGATTTGAATCTGACAGATACTTAGATTTTCATGAACTCGGGATGAAGCTCTATTCAGAAGCTGTGGAAGAGACTATTACAAGCGAAGAAGCGCAAGGCCTTTTTGACATGGCAGGAGGAAAATTCCAAGAGATGACAGCTCTAGCATTGTTCAATTGGGGAAATGTGCATATGTCCAGAGCAAGGAAGAAAGTTTATTTAACCGATGATTCTTCTAAAGAGCATATGcatgaacaaataaaaagttCATATGAATGGGCGCAGAAAGAATATGTAAAAGCCGGAGAAAAATTTGAAGCAGCCATTAAAATTAAGTCAGATTTTTATGaaggcttccttgctctaggtcagcAGAGGTTTGAACAAGCGAAACTTTGTTGGTATTATGCACTAAGTAGTAATATAGATTTAACAACATGGCACTCCACAGAGGTTCTTCATCTTTACAACAGTGCTGAGGAGAATATGGAGAAAGGAATGCTGATATGGGAAGAATTGCAAGAGCAGCAGCTGAGTGAAACCTCCAATATTGGATTGGACAGgctatttaaaaatatgtcaTCAGATGAAACTGCTTCACTGGTGGCAAACATGAGGTCTCAGATAAATCTCTTGTGGGGTACCATGCTATACGAACGCTcaattttggaattcaaattagGGCTACCTGTATGGCATGAGAGTCTGGAAGTTGCAATTGAGAAGTTTGAACATGCAGGAGCTTCTCCAACGGATACAGCTGTAATGTTGAAAAACCACTGTTCAAATAACACTGCTGTAGATGGTCTAGGTTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTATGAAGCTAAAAAGTTGCAGAAAGGAGTTCCGTCCTTTCGCTTAGAACCCTTGTTCAGAAGAAGAGTATCAAAAATATACCACGCCTTTGAGCTTGTATGA 2172 0.3702 MGRKKKQVGETGEENGNHNKVEDKSSNAYDNDTIIFISKAQELKEEGNRMFQKRDLQGAMVKYEKALKLLPTNHIDVSYVRSNIAACYMQMGLGEYPRAINECNLALEVTPKYSIALLKRARCYEALNRLDLALGDVSAVLSMEPNNIMALEISGKVKSALEDRGLRVNDAQIELPPDYVEPPFAVPTEKVAKEKKHKKKKSKKEKVTATDEIVAKQAEEKLEEKKDEDNIEAIEAEGNHKDKKKANKSKKKAAKEKKDKKKDDVKEVNAEKCNGRSEDVPKKTAKLVFGDDIRWAQLPVNCSLFQLREVICDRFPSLGAVLVKYRDQEGDLITITSDEELKWAETGSQGSIRLYIVEANPNHDPFYEKLHVKDVEIDNAAMNGCMMKSKEIIISSCVEDWVIQFAQLFKSHVGFESDRYLDFHELGMKLYSEAVEETITSEEAQGLFDMAGGKFQEMTALALFNWGNVHMSRARKKVYLTDDSSKEHMHEQIKSSYEWAQKEYVKAGEKFEAAIKIKSDFYEGFLALGQQRFEQAKLCWYYALSSNIDLTTWHSTEVLHLYNSAEENMEKGMLIWEELQEQQLSETSNIGLDRLFKNMSSDETASLVANMRSQINLLWGTMLYERSILEFKLGLPVWHESLEVAIEKFEHAGASPTDTAVMLKNHCSNNTAVDGLGFKIDEIVQAWNEMYEAKKLQKGVPSFRLEPLFRRRVSKIYHAFELV 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02157 723 Coils Coil 243 271 - -
Tsu08g02157 723 MobiDBLite consensus disorder prediction 1 25 - -
Tsu08g02157 723 MobiDBLite consensus disorder prediction 190 209 - -
Tsu08g02157 723 Pfam PB1 domain 284 357 IPR000270 GO:0005515
Tsu08g02157 723 PANTHER PROTEIN CLMP1 3 722 IPR044517 -
Tsu08g02157 723 CDD PB1 290 356 - -
Tsu08g02157 723 Coils Coil 219 239 - -
Tsu08g02157 723 PANTHER PROTEIN PHOX3 3 722 - -
Tsu08g02157 723 SMART tpr_5 40 73 IPR019734 GO:0005515
Tsu08g02157 723 SMART tpr_5 114 147 IPR019734 GO:0005515
Tsu08g02157 723 SMART tpr_5 78 113 IPR019734 GO:0005515
Tsu08g02157 723 Gene3D Tetratricopeptide repeat domain 36 179 IPR011990 GO:0005515
Tsu08g02157 723 ProSiteProfiles PB1 domain profile. 282 359 IPR000270 GO:0005515
Tsu08g02157 723 SUPERFAMILY CAD & PB1 domains 284 368 - -
Tsu08g02157 723 SMART PB1_new 282 359 IPR000270 GO:0005515
Tsu08g02157 723 MobiDBLite consensus disorder prediction 221 243 - -
Tsu08g02157 723 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Tsu08g02157 723 MobiDBLite consensus disorder prediction 221 270 - -
Tsu08g02157 723 SUPERFAMILY TPR-like 38 163 IPR011990 GO:0005515
Tsu08g02157 723 Gene3D - 252 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02157 Tsu-Chr8 29305192 29311927 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02157 23 147 Calmodulin-binding Proteins AT3G25230 33.094 7.78e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02157 - - gmx:100820306 1071.61