Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02133 ATGGCTATGGAGAATCAAAAGGATCATttgagagatgaagaagaagatgtggTCATTAACCGTTTTCCTATTGTCGGTATGCGTGTTCTTGCTGTTGACGACAACCCAACTTGTCTCAAAGTTTTAGACAAATTGCTTCGTCAATGCGAATATAATGttactactactactaatgCAATTGAGGCACTGAGAATGCTGAGGGAAAACAGAAATAACTTTGACTTGGTTATTAGTGATGTTGATATGCCTGATATGGATGGATTTAAGCTCCTTGAGACGGTGGGACTTGAAATGGACTTACCTGTCATTATGTTGTCGGGACATAGTGATAGAAACACGGTGTTCAAGGGTATTTCACATGGTGCATGTGACTATTTGGTGAAACCTGTTCGACTTGAAGTGCTCCGGAACATATGGCAACATGTAGTTCGAAAACAAACAACTGCTTCCAAGGATCAGAATAAGGTTTCCAATGAGGATAGGAACCCTAATATTTCCGGGGGAAATGGTCAAAACGTATTGGAGAACATTGTTGAACAGAATAAAAACCTAGGTAAAAGAAAGAAGGACCAAGCTGAGgaggaagaaaatgaagaatgtGAAGGGACTGGAGATGAGGATGACCCCTCATCGCAGAAGAAACCTCGTATGGCTTGGTCTGTCGATCTGCATAGGAAATTTGTTATTGCGGTTAATCAACTCGGCTTGGAAAAGGCTGTTCCGAAGAAAATACTTGACCTGATGAAAGATGAAAGGCTTACCAGGGAAAATGTGGCAAGCCATCTGCAGAAATTTAGACTCTATCTGAAAAAGGCAAACCATCTTCAAGGTAACATGGTTGCTGCATTGGGTGCTGTTAACGATCCTTACCTTCAGATGAATGGAATGTATGGATATGCAGATTTCTGCACCTCAACTGGATCTGGAACGATCTCAAGCACCGCAATGCCAACATATCCATCAAGTGCAGTTTTCAGTGAGCTGAACTCTCCAGCTGGCCTTAACGTGAGTGGAATGAGTTCTTCAATGCTGGTTCAGCCTGTTCCGTCTCAAAACATCAACAACTCCTGGATTCCTGCAAATCAAAGCTCAAGCTTATTACATGGCATTCCAACTAAGCTTAACCAATCTAAGCTAAACAATTGTGCTACTGGTATATCACAGTTAACTCAAATGGATTCCATTAGATTTGCAGTTCCATCTGGCTTCTACGATAGTAGGGCTACTCTTAGTAATCCAAACAGTTCTCTACAAGTCTCAAACCATCATTTAATGATGGATGGAAATTCACAGCAGACACACAATGCAGGGTCATTTAGAAATCAGTCTTCAGTTGGATCTGTTTCTTTGGGAAACACAAACGCTGGCGTTGGTGGTTTTTCTAATTTGTTGGATTATAATTACTGCAATGAAAATTGGCAAAGTCAAGCTCAGCCACCTAATTTTCCTGCCAATTCTTTGCCGGTATGCGAGTCTTTCAATGGCAACCAACTGCCTCCCATTAGCATTACTGCTTTTAACCCAAGACCTTATGTCGGTAACAATCAAGTTGACTTTTCGTCTGGAACTGCAATTACTGCTACTTTGGAGGATGCCAGAAATGTGCCAAGTTTCCAAGAAGGCGGCTTGATTGGGAATTTTATACAGCCTACAAGTTACGCTGCCCAACAAAGGTGGGAAGAACATAAAGTTGATTACAGCCAAAACATGATCAGTCCCTTCAATCCTGTAAATTCACAGGTTTCTTCCAGCAGGGCAGTGACAAATCTAGTGGCTGATAATATAAACCAAAGCAAAACAGTTTGCAACAATAGAGTTGATGCATCTTTTGTTGATCAAGTAACTGGCACTTCCAGATCAGTTGGCCAGTGCACTGATGTTGAGAAATTATCATCAGACGTACAAGTTAACTCAAATGATGCCTACATGACGGAGATGATGACGTCCCAAGTTGGATATATTCCCGGTTTTGGAACCGTAGATGAGATGCTGGGTACAATGGTCAACAGGGTATGA 2016 0.4038 MAMENQKDHLRDEEEDVVINRFPIVGMRVLAVDDNPTCLKVLDKLLRQCEYNVTTTTNAIEALRMLRENRNNFDLVISDVDMPDMDGFKLLETVGLEMDLPVIMLSGHSDRNTVFKGISHGACDYLVKPVRLEVLRNIWQHVVRKQTTASKDQNKVSNEDRNPNISGGNGQNVLENIVEQNKNLGKRKKDQAEEEENEECEGTGDEDDPSSQKKPRMAWSVDLHRKFVIAVNQLGLEKAVPKKILDLMKDERLTRENVASHLQKFRLYLKKANHLQGNMVAALGAVNDPYLQMNGMYGYADFCTSTGSGTISSTAMPTYPSSAVFSELNSPAGLNVSGMSSSMLVQPVPSQNINNSWIPANQSSSLLHGIPTKLNQSKLNNCATGISQLTQMDSIRFAVPSGFYDSRATLSNPNSSLQVSNHHLMMDGNSQQTHNAGSFRNQSSVGSVSLGNTNAGVGGFSNLLDYNYCNENWQSQAQPPNFPANSLPVCESFNGNQLPPISITAFNPRPYVGNNQVDFSSGTAITATLEDARNVPSFQEGGLIGNFIQPTSYAAQQRWEEHKVDYSQNMISPFNPVNSQVSSSRAVTNLVADNINQSKTVCNNRVDASFVDQVTGTSRSVGQCTDVEKLSSDVQVNSNDAYMTEMMTSQVGYIPGFGTVDEMLGTMVNRV 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02133 671 SMART REC_2 27 139 IPR001789 GO:0000160
Tsu08g02133 671 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 214 267 IPR006447 GO:0003677
Tsu08g02133 671 MobiDBLite consensus disorder prediction 146 179 - -
Tsu08g02133 671 CDD REC_typeB_ARR-like 29 143 - -
Tsu08g02133 671 Pfam Response regulator receiver domain 29 137 IPR001789 GO:0000160
Tsu08g02133 671 ProSiteProfiles Response regulatory domain profile. 28 143 IPR001789 GO:0000160
Tsu08g02133 671 Coils Coil 174 198 - -
Tsu08g02133 671 Gene3D - 26 162 - -
Tsu08g02133 671 MobiDBLite consensus disorder prediction 146 216 - -
Tsu08g02133 671 Gene3D - 210 272 - -
Tsu08g02133 671 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 649 IPR045279 GO:0009736
Tsu08g02133 671 SUPERFAMILY Homeodomain-like 212 271 IPR009057 -
Tsu08g02133 671 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 649 - -
Tsu08g02133 671 SUPERFAMILY CheY-like 26 151 IPR011006 -
Tsu08g02133 671 PIRSF RR_ARR_type-B 1 651 IPR017053 GO:0003677|GO:0003700|GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02133 Tsu-Chr8 28853149 28856557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02133 13 423 Response Regulator Gene Family AT2G25180 46.824 2.39e-107 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu08g02133 Response_reg 2.6e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02133 K14491 - gmx:100776075 764.222