Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02089 ATGGTTATTCTCTCACTTCTTCCTTCAGCTATTCCTCTCTCGTCAATACAGATGAAACAAAACTCTATTACCATATTTATTCTCATTCTTAGTTTAAGATTGAGTTCCACTTCTGAAGTTGATGAGGTAACAAGGTTACCTAATCAGCCCAAAGTTGGATTCAAACAATATGCTGGGTATGTCTTTCTTGATGAAACCCATGACAGAGCCCTGTTCTATTACTTCGTGGAAGCTGAGAATGATCCTGCTTCCAAACCGGTGGTATTGTGGCTGAATGGAGgTCCCGGTTGTTCTTCGATTGGGCAAGGAGCATTCGGTGAACATGGTCCTTTCAAGCCTACAAGAGAAGGCCATCTGGTGAAAAACCAATTTAGTTGGAACAGAGAAGCTAACATGATTTACCTAGACTCTCCTATTGGTGTTGGCTTCTCATTTTCGGTCAACCAATCCTTTTATTATCTTGTGAATGATGAAATGACAgCGAGGGATAATCTGTTGTTTCTACAGGGATGGTTCACAAAATTCCCTAAGTacaaaaacaatgatttttttataaccGGGGAAAGCTATGCAGGTCATTATGCACCTCAACTTGCACAACTAATCCTTCAAACTAAAACCACCAAGATTAATTTGAAGGGGATAGCTATAGGCAATCCTCTTCTAGAATTCAACAAAGACTTTGACTCCTCAGCTGATTTCTTATGGTCTCATGGACAGATTCAAGATTCGACATTTGAATTGTTAAAAACAGTATGCAGCCGTTCCAATATTAAAAGACAAATTCGAACTGGGAATCTTAGTAACAGTTGTATAGAAGTGAACCAGCTATTATCAGGGGAGGTTGGTGGATATATCGATACATTTGATGTTATTGCTGATATTTGTCCACCACCAGAAAAACACCAAGCATATGTGTTGACTCAAATGCAAGCTGCTGAAGAGAAGATTGACGTATGTGTGGAACATGAAACCGTCACATACATGAATAGGAAAGAAGTGCACAATGCACTAAATGCCAAGCTTGTAGGAATAACCCATTGGTCAACCTGCAGTTCAGTTCTGGTATATAACTTTCAGAATCTTGAGATTCCAACAATCTCAATACTAGGGACACTTGTGAAGTCAGGTGTAAGAGTTCTAGTATTCAGTGGAGATCAAGATTCTGTCATACCATTTATGGGGACAAGGTCTTTAATAAAGGGATTGGCCAAGGATTTGGGATTGAACACAACTCAGGCTTATAGAGCTTGGTTTAGGGGTAAACAGGTTGCTGGGTGGACACAAGTATATGGTAATATACTTACCTTCGCAACAATTAGAGGAGCAGGACATGCAGCTCCCTTTTATCAACCAGGGAGGTCCCTGCAGCTTTTCAAGACATTTTTGGAAGGAAAACCACTTCCAAATAGGCATTGA 1419 0.3946 MVILSLLPSAIPLSSIQMKQNSITIFILILSLRLSSTSEVDEVTRLPNQPKVGFKQYAGYVFLDETHDRALFYYFVEAENDPASKPVVLWLNGGPGCSSIGQGAFGEHGPFKPTREGHLVKNQFSWNREANMIYLDSPIGVGFSFSVNQSFYYLVNDEMTARDNLLFLQGWFTKFPKYKNNDFFITGESYAGHYAPQLAQLILQTKTTKINLKGIAIGNPLLEFNKDFDSSADFLWSHGQIQDSTFELLKTVCSRSNIKRQIRTGNLSNSCIEVNQLLSGEVGGYIDTFDVIADICPPPEKHQAYVLTQMQAAEEKIDVCVEHETVTYMNRKEVHNALNAKLVGITHWSTCSSVLVYNFQNLEIPTISILGTLVKSGVRVLVFSGDQDSVIPFMGTRSLIKGLAKDLGLNTTQAYRAWFRGKQVAGWTQVYGNILTFATIRGAGHAAPFYQPGRSLQLFKTFLEGKPLPNRH 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02089 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 171 196 IPR001563 GO:0004185|GO:0006508
Tsu08g02089 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 135 145 IPR001563 GO:0004185|GO:0006508
Tsu08g02089 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 435 448 IPR001563 GO:0004185|GO:0006508
Tsu08g02089 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 134 IPR001563 GO:0004185|GO:0006508
Tsu08g02089 472 PANTHER CARBOXYPEPTIDASE 31 456 - -
Tsu08g02089 472 Pfam Serine carboxypeptidase 50 465 IPR001563 GO:0004185|GO:0006508
Tsu08g02089 472 SUPERFAMILY alpha/beta-Hydrolases 46 469 IPR029058 -
Tsu08g02089 472 ProSitePatterns Serine carboxypeptidases, serine active site. 185 192 IPR018202 GO:0004185
Tsu08g02089 472 Gene3D alpha/beta hydrolase 37 297 IPR029058 -
Tsu08g02089 472 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 456 IPR001563 GO:0004185|GO:0006508
Tsu08g02089 472 ProSitePatterns Serine carboxypeptidases, histidine active site. 435 452 IPR033124 GO:0004185
Tsu08g02089 472 Gene3D - 320 355 - -
Tsu08g02089 472 Gene3D - 367 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02089 Tsu-Chr8 27734792 27739600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02089 328 468 Calmodulin-binding Proteins AT2G22960 32.624 6.29e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02089 K16297 - gmx:100805028 622.468