Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu08g02084 | ATGCAAGAAACTATCATTATATCGTGGCTTTCTCAAATGGATGTTCCTCAAGATGCTTTTAGGTTGGTAGTGGCAAAAATATTGGAATGTGCTCGTGATATGATTAAGACACATAAGAATCTAAGGATTCTTCCTATTCGGGTCAATCTTGTTGTTACAAGGGCTAGCGAAGATGAAAGTGATGAAGATGACGATGATGAAAGTGATGAAGGTATTGAAAGCGATGAAGCAGAAAAGTCATGTGTTAAGGGATCAGAGACAATGGATGTTGAAATAGAGAAAAATTGTGcaatttgtattgaaaattttaattttaatgttggAGTTCCTATGCCATGTATGCATGTGTTTCATATAAAGTGTATCCGTGATTGGTTAGAGAAAGGCAATACTTGTCCTTTGTGTAGGTTTAAATTGCCCACTACTTAG | 429 | 0.3427 | MQETIIISWLSQMDVPQDAFRLVVAKILECARDMIKTHKNLRILPIRVNLVVTRASEDESDEDDDDESDEGIESDEAEKSCVKGSETMDVEIEKNCAICIENFNFNVGVPMPCMHVFHIKCIRDWLEKGNTCPLCRFKLPTT | 142 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu08g02084 | 142 | MobiDBLite | consensus disorder prediction | 55 | 84 | - | - | |
Tsu08g02084 | 142 | ProSiteProfiles | Zinc finger RING-type profile. | 96 | 136 | IPR001841 | - | |
Tsu08g02084 | 142 | PANTHER | F6A14.12 PROTEIN-RELATED | 36 | 141 | - | - | |
Tsu08g02084 | 142 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 139 | IPR013083 | - | |
Tsu08g02084 | 142 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 36 | 141 | - | - | |
Tsu08g02084 | 142 | SUPERFAMILY | RING/U-box | 95 | 140 | - | - | |
Tsu08g02084 | 142 | SMART | ring_2 | 96 | 135 | IPR001841 | - | |
Tsu08g02084 | 142 | Pfam | Ring finger domain | 95 | 136 | IPR001841 | - | |
Tsu08g02084 | 142 | MobiDBLite | consensus disorder prediction | 57 | 74 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu08g02084 | Tsu-Chr8 | 27661708 | 27662136 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu08g02084 | 93 | 141 | C3H Transcription Factor Family | AT5G02750 | 56.000 | 6.14e-12 | 59.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu08g02084 | - | - | cam:101499491 | 146.747 |