Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02084 ATGCAAGAAACTATCATTATATCGTGGCTTTCTCAAATGGATGTTCCTCAAGATGCTTTTAGGTTGGTAGTGGCAAAAATATTGGAATGTGCTCGTGATATGATTAAGACACATAAGAATCTAAGGATTCTTCCTATTCGGGTCAATCTTGTTGTTACAAGGGCTAGCGAAGATGAAAGTGATGAAGATGACGATGATGAAAGTGATGAAGGTATTGAAAGCGATGAAGCAGAAAAGTCATGTGTTAAGGGATCAGAGACAATGGATGTTGAAATAGAGAAAAATTGTGcaatttgtattgaaaattttaattttaatgttggAGTTCCTATGCCATGTATGCATGTGTTTCATATAAAGTGTATCCGTGATTGGTTAGAGAAAGGCAATACTTGTCCTTTGTGTAGGTTTAAATTGCCCACTACTTAG 429 0.3427 MQETIIISWLSQMDVPQDAFRLVVAKILECARDMIKTHKNLRILPIRVNLVVTRASEDESDEDDDDESDEGIESDEAEKSCVKGSETMDVEIEKNCAICIENFNFNVGVPMPCMHVFHIKCIRDWLEKGNTCPLCRFKLPTT 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02084 142 MobiDBLite consensus disorder prediction 55 84 - -
Tsu08g02084 142 ProSiteProfiles Zinc finger RING-type profile. 96 136 IPR001841 -
Tsu08g02084 142 PANTHER F6A14.12 PROTEIN-RELATED 36 141 - -
Tsu08g02084 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 139 IPR013083 -
Tsu08g02084 142 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 36 141 - -
Tsu08g02084 142 SUPERFAMILY RING/U-box 95 140 - -
Tsu08g02084 142 SMART ring_2 96 135 IPR001841 -
Tsu08g02084 142 Pfam Ring finger domain 95 136 IPR001841 -
Tsu08g02084 142 MobiDBLite consensus disorder prediction 57 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02084 Tsu-Chr8 27661708 27662136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02084 93 141 C3H Transcription Factor Family AT5G02750 56.000 6.14e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02084 - - cam:101499491 146.747