Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02080 ATGGTACTCATGGATAATGATGGTGGTAGAATTCATGCTACTATAAAGAAAACTTTGatttacaaattcaaaaatgaTCTTATTGAGGGGAAAGTTTATTGCTTTGAAAATCTTGGTGTTTCAACAAATGGTGGTGCGTACCGCACAACTCATCACCCttataaaatgaattttcaatATACTTCTGTTGTTCAAAGGTTGTCTAATTTTGAGATTAATATATCTCCATTTGATTTTGTTCCAATATCTGACATTGTTACTGGTGTTTATGACACTGATTTTCTATGTGATGTTATTGGTGTGTTGACTGGTTTCGGCCAAGAGCGCGAGATCACAAACCAAAATGGAACGGCGACCAAACTGAATGTGATTATCTTGGAGCAAAATggGCATAAAATCCAATGTACTCTGTTTGGACCTTATGTCGATGAACTGAATGCTTTCCTTGGTGCGGGAGATTGTAACAATGCTACTGTTATCATGCAATTGGCAAAGGCTAAATCTTTCCAAGACAAGATACACATCCAAAACTGCTTAAACTGTTCTGTTCTGATCTTTAACTCGACATGTGCTGAAAGTgGTTCCTTACATGTTGTTGCTGCAACTGTCAAAAGGATTTTGAATCCTGACAGTTTTTGGTACACAGCATGTGTATGTGGTAAAGATGTGATTCCGGATTCACGAATGTTTTATTGCGAGAAGTGCAACAAACATGTATCTAAAGTGCTACCTAGGTTTTGTATCAAGGTTCGAGTCATGGACCATACCGATTCTGCTACATTTGTCATCTTTGACAATAATGCAGCAACGCTATTTGATATGTCTTGTGCAGACATGATTCATGAGATGAAAATTACTGGTGGTGTTGGAGCTATGCCTCCTCAACTTCATTCATTGATTGATAATACTTGGCTGTTCAAGGTTGAGGCGAAGGCAAATCAGAACCAAAGGTTTGAGCAATCTTTTAGGGTAAAAAAGATTTGCACTGATGCTGCCATCATTACTCAGTTTCAGCTTAAGTGGGACAAAGAAGAAGCTGCTTTTTCTAAATCTACAAATgAAATTGGATCTCTTAGTACTTTGGTGGATAAAGCAAAAGGTGTGTTGGTTGAAGGATCATCACATGTACTATCTGAGgattttgaTAAGTCGCCTGGAAGTAGTTTTAAAGGGAAGgagGTCTTTGAAAATGCTGCTGGCAGTAGTATAAAAGGAAAGAAGATAATTGTTGAGGGAACACCTGATGAAGTTTCACAAGACTTAATGAATAAATTTTCCTTGGCTGCTGTGAATCTTGGTGATAATTCTGATGTATGTTTTGAAGAGACACCAACTAAATTTGTGGAGAAGCAAGCTGTTTCTATCAAAGAGAAACCAACAAATGGGGTGGAGAACAAAGTTGTGTCTGTGAAAGAGAAATCAAATTATGTTGTGGAGAAGCAATATGTGTCTGtcaaagagaaaacaaaaactgTTGGGGAGAAGGAAGTTGTGTCCATGAAAGAGAAACCAAGGACTGTTGTGGACAAGCAACCTGAATCTGTTAAAGCGATACCAAAAATTGTAGTTTCTGAGATATCTGCATCTGTGGAAAAAGATGCAATTTCTGCAAATATCATCAACCTTGAAGGTTCTGATAATGGTCGCCCAAATATCATTCGTAGAAAATCGGTTGTCAAGAGAAACATCTCCTTCGAATGCAAAGGAGGATAA 1713 0.3649 MVLMDNDGGRIHATIKKTLIYKFKNDLIEGKVYCFENLGVSTNGGAYRTTHHPYKMNFQYTSVVQRLSNFEINISPFDFVPISDIVTGVYDTDFLCDVIGVLTGFGQEREITNQNGTATKLNVIILEQNGHKIQCTLFGPYVDELNAFLGAGDCNNATVIMQLAKAKSFQDKIHIQNCLNCSVLIFNSTCAESGSLHVVAATVKRILNPDSFWYTACVCGKDVIPDSRMFYCEKCNKHVSKVLPRFCIKVRVMDHTDSATFVIFDNNAATLFDMSCADMIHEMKITGGVGAMPPQLHSLIDNTWLFKVEAKANQNQRFEQSFRVKKICTDAAIITQFQLKWDKEEAAFSKSTNEIGSLSTLVDKAKGVLVEGSSHVLSEDFDKSPGSSFKGKEVFENAAGSSIKGKKIIVEGTPDEVSQDLMNKFSLAAVNLGDNSDVCFEETPTKFVEKQAVSIKEKPTNGVENKVVSVKEKSNYVVEKQYVSVKEKTKTVGEKEVVSMKEKPRTVVDKQPESVKAIPKIVVSEISASVEKDAISANIINLEGSDNGRPNIIRRKSVVKRNISFECKGG 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02080 570 Gene3D - 164 335 IPR012340 -
Tsu08g02080 570 SUPERFAMILY Nucleic acid-binding proteins 1 69 IPR012340 -
Tsu08g02080 570 CDD RPA1_DBD_B_like 97 192 - -
Tsu08g02080 570 Pfam Replication factor-A C terminal domain 199 315 IPR013955 -
Tsu08g02080 570 CDD RPA1_DBD_C 199 327 IPR013955 -
Tsu08g02080 570 Pfam Domain of unknown function DUF223 1 95 IPR003871 -
Tsu08g02080 570 Gene3D - 1 69 IPR012340 -
Tsu08g02080 570 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 1 280 - -
Tsu08g02080 570 CDD RPA1_DBD_A_like 1 64 - -
Tsu08g02080 570 PANTHER REPLICATION FACTOR A 1, RFA1 1 280 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu08g02080 570 SUPERFAMILY Nucleic acid-binding proteins 77 191 IPR012340 -
Tsu08g02080 570 SUPERFAMILY Nucleic acid-binding proteins 191 326 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02080 Tsu-Chr8 27528056 27531045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02080 3 281 Core DNA Replication Machinery Family AT4G19130 22.255 2.12e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02080 - - mtr:MTR_4g036240 452.595