Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02079 ATGGATTCTACATGCTTTGGTTCTAATGAGGAAGTCTCACTAAAGCAAAAATGGAAATCCGCTACAGAAGAGACAAGAATATCTAGTAGTGAGAATGGTTGCTTCGATTGTAATATTTGCTTGGAATCAGCACATGATCCTGTGGTTACACTATGTGGTCACCTGTATTGTTGGCCATGCATATACCAGTGGCTTAATGTCCAAACCTCTTCTGTAGAACCGGATAAGCAGTCCTCATGTCCAGTTTGTAAAGCTGAGATCTCCCATGCTTCATTAGTCCCACTTTATGGCCGAGGAAAATCTAATTCCGAAACTGAAACCAAGAAACTCCAGGTAGGTTTAGGTATACCTCATAGACCACCTCCTTACAATTTGAATGCTATGCTAACAACCTCTAATCGTGCATCAAATTCACATCACGGGGAGCAACTCCGTCCAAATTATTTCCAGTCACAATCGCGGCCGATTCATTATCAGCACTACATCCCTCACCTTTATGGAGGTTATGGTGCCAATGGATTACCTTATCTTGGTGGTGCTGCTATGACCAGTTTCTTCGATCCTGTGATTGGTTTGTTTGGGGAGATGGCGTTGACAAGGATTTTCGGTGTCTCTGATGCAAATGTGTTTGCTTACCCTCAAAATGGAAACACCAGTCCTAGAATGAGGAGACAGGAGATGCAGATTGACAAGTCTTTAAACAGAGTTTCTATCTTTCTTCTTTGTTGTTTCATTTTGTGTCTTCTCTTGTTCTGA 756 0.4193 MDSTCFGSNEEVSLKQKWKSATEETRISSSENGCFDCNICLESAHDPVVTLCGHLYCWPCIYQWLNVQTSSVEPDKQSSCPVCKAEISHASLVPLYGRGKSNSETETKKLQVGLGIPHRPPPYNLNAMLTTSNRASNSHHGEQLRPNYFQSQSRPIHYQHYIPHLYGGYGANGLPYLGGAAMTSFFDPVIGLFGEMALTRIFGVSDANVFAYPQNGNTSPRMRRQEMQIDKSLNRVSIFLLCCFILCLLLF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02079 251 SMART ring_2 37 83 IPR001841 -
Tsu08g02079 251 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Tsu08g02079 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 6 251 - -
Tsu08g02079 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 146 IPR013083 -
Tsu08g02079 251 CDD RING-HC_AtRMA_like 35 85 - -
Tsu08g02079 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 251 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tsu08g02079 251 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
Tsu08g02079 251 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Tsu08g02079 251 SUPERFAMILY RING/U-box 34 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02079 Tsu-Chr8 27522696 27524958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02079 15 237 C3H Transcription Factor Family AT4G27470 47.577 7.80e-56 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02079 K10666 - gmx:100817526 344.354