Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02072 ATGGGACCTCTTAATTTTGTTTGGTATCTTTTATTGGTTTTATTATTATGTGCAGTTAGAATCCACGTCCAAGCTAACGGTTGGCTTAATGCTCATGCAACGTTCTATGGGACCAATCAAAGTCCAACGAGCCTTGGAGGAGCATGTGGTTATGATGATACCTTTCATGCTGGATTTGGAGTGAACACAGCAGCAGTGAGCACTATGTTATTCAGAGATGGTGAGGTTTGTGGTGCTTGCTACCAAGTTATATGTGACTATCGAATTGACCCAAAATGGTGTCTTAGAAGTCGAAGTGTCACAATAACTGCAACAAATTTTTGCCCTCCAAACAACCATGGAGGATGGTGTGATCCTCCTAACCATCACTTTGATATGTCAATGCCTTCATTCCTTCGCATTGCACGACAAGGCAATGAAGGCATCGTTCCTATCCTTTACAGAAgGGTGGCATGCAAAAGAAGAGGAGGAGTTAGGTTCACATTGAAGGGGCAATCTAATTTCAACATGGTGATGATAACAAACGTGGGTGGTAGTGGTGATGTGAAGGGAGTGTGGATAAGAGGATCAAGAACTAGAACATGGTTGCCAATGCATAGAAATTGGGGAGCTAATTGGCAGAGCAATGCAGATCTAAGGAATCAGAGACTTTCATTCAAGATTACTTTGGTTGATGGTAACACATTGGTTTTTCTCAATGTGGTTTCTTCCAATTGGAGATTTGGACAAACATTTTCATCCCACAATCAATTCTTTTAG 759 0.4124 MGPLNFVWYLLLVLLLCAVRIHVQANGWLNAHATFYGTNQSPTSLGGACGYDDTFHAGFGVNTAAVSTMLFRDGEVCGACYQVICDYRIDPKWCLRSRSVTITATNFCPPNNHGGWCDPPNHHFDMSMPSFLRIARQGNEGIVPILYRRVACKRRGGVRFTLKGQSNFNMVMITNVGGSGDVKGVWIRGSRTRTWLPMHRNWGANWQSNADLRNQRLSFKITLVDGNTLVFLNVVSSNWRFGQTFSSHNQFF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02072 252 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Tsu08g02072 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Tsu08g02072 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Tsu08g02072 252 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Tsu08g02072 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Tsu08g02072 252 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Tsu08g02072 252 Pfam Lytic transglycolase 63 147 IPR009009 -
Tsu08g02072 252 SUPERFAMILY Barwin-like endoglucanases 27 175 IPR036908 -
Tsu08g02072 252 Gene3D - 157 252 IPR036749 -
Tsu08g02072 252 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Tsu08g02072 252 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Tsu08g02072 252 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Tsu08g02072 252 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Tsu08g02072 252 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Tsu08g02072 252 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Tsu08g02072 252 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Tsu08g02072 252 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Tsu08g02072 252 PANTHER EXPANSIN-A15 5 251 IPR002963 GO:0009664
Tsu08g02072 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 247 IPR007117 -
Tsu08g02072 252 Gene3D - 17 153 IPR036908 -
Tsu08g02072 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 157 IPR007112 -
Tsu08g02072 252 SMART dpbb_1 63 147 IPR007112 -
Tsu08g02072 252 PANTHER EXPANSIN-A12 5 251 - -
Tsu08g02072 252 SUPERFAMILY PHL pollen allergen 154 247 IPR036749 -
Tsu08g02072 252 Pfam Expansin C-terminal domain 158 235 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02072 Tsu-Chr8 27460979 27465595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02072 7 252 Expansin Gene Family AT3G15370 57.971 1.26e-116 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02072 - - gmx:106795376 461.84