Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02066 ATGGGAATTCCAGAGAAAGATCCTCTATCACAATTGAGTTTACCACCTGGTTTCAGATTCTTCCCCACCGACGAGGAACTACTTGTTCAATATCTATGTCGAAAAGTTGCTGGCCACCATTTTTCTTTGCCAATTATTGCTGAAATTGATTTATACAAATTTGATCCCTGGGTTCTTCCAGGCAAGGCTAATTTTGGGGAGAAAGAATGGTACTTTTTTAGTCCAAGGGATAGAAAATATCCGAATGGTTCTCGACCGAACAGAGTTGCTGGGTCGGGTTACTGGAAAGCTACGGGAACTGACAAAATTATCACAACCGAAGGTAGAAAAGTTGGCATAAAAAAAGCACTTGTTTTCTATATTGGAAAAGCACCAAAAGGAACAAAAACTAATTGGATTATGCACGAGTATCGCCTTCTTGATGCTTCGCGTAAACACAACCTTGGAAGCTCAAAATTGGATGATTGGGTTCTATGTCGCATATACAAGAAGAATTCAAGCTCACAAAAGGAAGTTCAAACATTTTCAAGCAAAGAATGCAGCAACGGATCATCACCTTCATCCTCGTCACACGCGGATGATATGTTAGACATGTTCCTGGAAATCAATGACCAGAGCTTTGAGCTTCCAAGAGTGACATCGCTCCGAATGCAACATCAAGAGGAGAAATTCGGGTTTCACAACATGGGTGCCGGAATTTTTTCTGATTGGGTTAGCCCTCCGGATCTTGAATCAATACCCGAATTTGATTCAGAGAGCCAAACACAAGGGATGTTGAATTATAGTTGTAATGACTTTTGCGTCCCTTCAGTGCCGCCATTTGGCCACATGGATTTGTCCTCGACATCCAAGAACCCCACGGACGAAGAGGTTCAAAGTGGCATCAGGACACACCGGGTTAACGAAATTTCCAGTTTATATCAACATAATCCTAATGgatttttgtcaaacttgggTGATCCGTTTCAGTTTAGGTATTCAGgtcattaa 990 0.4071 MGIPEKDPLSQLSLPPGFRFFPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPGKANFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDASRKHNLGSSKLDDWVLCRIYKKNSSSQKEVQTFSSKECSNGSSPSSSSHADDMLDMFLEINDQSFELPRVTSLRMQHQEEKFGFHNMGAGIFSDWVSPPDLESIPEFDSESQTQGMLNYSCNDFCVPSVPPFGHMDLSSTSKNPTDEEVQSGIRTHRVNEISSLYQHNPNGFLSNLGDPFQFRYSGH 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02066 329 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Tsu08g02066 329 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Tsu08g02066 329 PANTHER NAC TRANSCRIPTION FACTOR 56 1 311 - -
Tsu08g02066 329 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 311 - -
Tsu08g02066 329 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Tsu08g02066 329 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02066 Tsu-Chr8 27340020 27341538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02066 1 265 NAC Transcription Factor Family AT4G27410 65.035 8.10e-118 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu08g02066 NAM 8.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02066 - - gmx:100811301 498.819