Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02060 ATGGTAATGCCAAAAGTTCCAAAATATACACCTTTTGTTCTAATTCTTTTACTATTCGCGGCGTGTAGCGAATCATTTGCCTCATCATTCATTCCCATTGATAATTATTTGGTCGCTTGTGGTTCTTCCCACGATATCATTTTTCAGGGTCGAACTTTCATACCTGAATTTAAATTTGAACATTCCAACCTTCAAATAATATCCAACAAATCTATTGCAGTTACCTCTAAACTCAATAGTACACTTTCACCACTCTATAACTCAGCTCAACTCTTCTTTGAAAAGGCAtcatataaattcaaaattcaacaaCATGGGAGACATTGGATTCGTCTCTATTTTCACCCTTTTCCCGATTACAACCCCAACATGACCTTTGCCTCAATAAAAGTAATCACCGAAAGTTTTGTGCTtcttgataacttcacttttgcAAACTATACCAACTCTCATTTTGAGAAGGAGTATGCGATCAACATTACATCAGACGAGTTATCACTTACTTTCATCCCTCAAAACAATTCACTTGTCTTTGTTAATGCCATAGAAGTTATCTCTATATCAGATGAGCTGTTCCTTGACCATATACTAGTAACTCTAAATCCATCAGGCTTTTTTGAACAATTCTCAAAGTATGCCCTTGAAACAGTGTACAGGGTGAATATTGGAGGTGCAACTTTAAGTGACACCCTTGGAAGGACTTGGGAGAATGATGAATATTACTTCCACCCACCCATAAACACCTCCACTAGTTCTTATCTTGTTTCTACCAACCCTTCTGCAATAAAGTATTCTGTTGCGGCTCCACCATCGGTTTATGCCACAGCCAGAGCCTTGAAAATCGCATCACAGTCACAGGGATACAATTTAAGTTGGATCTTCAATGTAGATCCAAACTTCATGTATTTTGTTCGGGTTCATTTTTGTGACATCATTAACAATTCACTAAACAACAATAtggttttcaatttatttataaatgggGCATTTGCTCTTAGAAGtcttgatctctcatccaaaaCCAGGGGGCTTGCTGTCCCATATTACTACGACTTCATCTCCTACTCCTCAGGAAGCACTATGAAAGTGAGTGTGAATGGTAATCCTGGTAAAATGAAAGAAACTTTAAATGCAATCATGAATGGTGTTGAGATATTGAAGATTAGAAACAATGTAGATAGTTTGGATAAGTTTTCATCTTTTCAGAATTTTTCTTCTAGTGTTTcacattcaccaaaaaaaactttgaaaataaGTACAAAACAAGGGATTTGGCGGACTATCATTTTAGTTGGTTGCAGTGTGTGTGTTTTAGCGTTTCTAGCATTTGGTGGATTATCATTTTGTTACTTGAAAGGTCGCTGGAGGAAGAACAAATCAGTAACTAGTTTTAAGTTTCTGAGACATTATACTTTGCCTGAGATGCAACAAGCAACAAATTATTTTGATGCTGAGCTGCTTATTGGAGCAGGAGGATTTGGAAAGGTGTATAAAGGAAAACTAGAAAATGGGAAAGAAGTAGCCATCAAAGTAGCAAACCCTGAATCTAGACAAGGTCTCAGTGAATTCCAAAATGAGATTGAGTTGTTGTCTGGTCTTCGTCATCAAAATCTTGTCTCTCTTGTAGGTTGTTGTAATGAAGACTCAGAACTGATTCTGGTATACAATTACATGGTGAATGGATCTCTCAACAGTCATCTATATGGTAGGGACTTTGTTCCTCTATCTTGGAAGCAACGTCTTGGGATATGTTTAGGGGCTGCAAAGGGACTTTTATATCTTCACACTGGAGCTAAACAGAGCATAATTCACCGTGATGTGAAGACAACAAACATTCTCTTGGATGAAAATCTTGTTCCAAAAGTTGCTGATTTTGGCATATCAAAAAAGGGTCCTCTTCTTGATAAAAGTCATGTTACAACCAATGTAAAGGGTAGTTTTGGCTATGTTGATCCAGAATATTTTTGGACTAAGTATCTGACTAAGAAATCAGATGTTTACTCGTTTGGGGTGGTGTTGATTGAAGTTATATGTGGGAAGCCTGCTTTAGATGATACTCGTACGACACAGGAGATGAATTTGGCACTGTGGGCATTAAACTGCCATAAAAAGGGTACTTTCAATGAAATGGTAGACCCATATTTGATTGGAAAAGTTAATATGGATTCCCTAAACAAGGTTTTAGAGTTGGCGTGGAAGTGCTTGGAGGAGCGTCGGGCTAACAGACCACCAATGGGTTATGTATTATGTCAACTGGAAGAGGCTCTCCATCTTGAGTTGGCTACACATGTTTTGAATGACAATGACAATGATAATGGGGATTCTTCTACACATATCAGTGTAGGAAATGGATTTACAGAGTATAAAGAAGCTGTTGTTTGA 2382 0.361 MVMPKVPKYTPFVLILLLFAACSESFASSFIPIDNYLVACGSSHDIIFQGRTFIPEFKFEHSNLQIISNKSIAVTSKLNSTLSPLYNSAQLFFEKASYKFKIQQHGRHWIRLYFHPFPDYNPNMTFASIKVITESFVLLDNFTFANYTNSHFEKEYAINITSDELSLTFIPQNNSLVFVNAIEVISISDELFLDHILVTLNPSGFFEQFSKYALETVYRVNIGGATLSDTLGRTWENDEYYFHPPINTSTSSYLVSTNPSAIKYSVAAPPSVYATARALKIASQSQGYNLSWIFNVDPNFMYFVRVHFCDIINNSLNNNMVFNLFINGAFALRSLDLSSKTRGLAVPYYYDFISYSSGSTMKVSVNGNPGKMKETLNAIMNGVEILKIRNNVDSLDKFSSFQNFSSSVSHSPKKTLKISTKQGIWRTIILVGCSVCVLAFLAFGGLSFCYLKGRWRKNKSVTSFKFLRHYTLPEMQQATNYFDAELLIGAGGFGKVYKGKLENGKEVAIKVANPESRQGLSEFQNEIELLSGLRHQNLVSLVGCCNEDSELILVYNYMVNGSLNSHLYGRDFVPLSWKQRLGICLGAAKGLLYLHTGAKQSIIHRDVKTTNILLDENLVPKVADFGISKKGPLLDKSHVTTNVKGSFGYVDPEYFWTKYLTKKSDVYSFGVVLIEVICGKPALDDTRTTQEMNLALWALNCHKKGTFNEMVDPYLIGKVNMDSLNKVLELAWKCLEERRANRPPMGYVLCQLEEALHLELATHVLNDNDNDNGDSSTHISVGNGFTEYKEAVV 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02060 793 Gene3D - 35 188 - -
Tsu08g02060 793 Gene3D - 212 390 - -
Tsu08g02060 793 Pfam Protein tyrosine and serine/threonine kinase 487 747 IPR001245 GO:0004672|GO:0006468
Tsu08g02060 793 SUPERFAMILY Protein kinase-like (PK-like) 456 752 IPR011009 -
Tsu08g02060 793 ProSitePatterns Protein kinases ATP-binding region signature. 488 510 IPR017441 GO:0005524
Tsu08g02060 793 SMART serkin_6 482 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02060 793 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Tsu08g02060 793 PANTHER OS07G0166700 PROTEIN 25 774 IPR045272 GO:0004714|GO:0006468
Tsu08g02060 793 ProSiteProfiles Protein kinase domain profile. 482 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02060 793 Gene3D Phosphorylase Kinase; domain 1 454 557 - -
Tsu08g02060 793 Gene3D Transferase(Phosphotransferase) domain 1 558 776 - -
Tsu08g02060 793 Pfam Malectin-like domain 68 387 IPR024788 -
Tsu08g02060 793 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672|GO:0006468
Tsu08g02060 793 PANTHER OS03G0759600 PROTEIN 25 774 - -
Tsu08g02060 793 CDD STKc_IRAK 488 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02060 Tsu-Chr8 27297138 27299519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02060 28 761 Receptor kinase-like Gene Family AT4G39110 42.125 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Tsu08g02060 Malectin_like 2.2e-29 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02060 - - mtr:MTR_8g467150 977.622