Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02048 ATGCGTATTGGGGTTGGCAAGATCAAGTGTTATATGCAACAACTTCTTCGTGGTCTTGCACATTGTCACAGTCGCGGTGTTATGAATGGTGACATAAAAGGCTCAAATCTTCTGCTTGACAATAATGGCAATGTGAAGATTGCTGATTTTGGGCTTGCAACTCATTTTCAGCCATCTCAAGGGCAGCCTTTAACAAGGCGTGTAGTTACCTTGCCGGGAAGCCTATAA 228 0.4386 MRIGVGKIKCYMQQLLRGLAHCHSRGVMNGDIKGSNLLLDNNGNVKIADFGLATHFQPSQGQPLTRRVVTLPGSL 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02048 75 Pfam Protein kinase domain 7 70 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02048 75 Gene3D Transferase(Phosphotransferase) domain 1 2 72 - -
Tsu08g02048 75 SUPERFAMILY Protein kinase-like (PK-like) 6 71 IPR011009 -
Tsu08g02048 75 ProSiteProfiles Protein kinase domain profile. 1 75 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02048 75 PANTHER CELL DIVISION PROTEIN KINASE 7 71 - -
Tsu08g02048 75 PANTHER KINASE CDK9, PUTATIVE-RELATED 7 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02048 Tsu-Chr8 27130465 27131206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02048 1 71 Core Cell Cycle Gene Families AT5G10270 56.338 2.35e-21 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tsu08g02048 Pkinase 2.1e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02048 - K08819 cam:101495256 118.242