Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02045 ATGGACAATATTGGAGGCTTGAGAAAAGGTGCATGGAGTTATGAGGAAGATGAACTACTGAAGGCTTGCATTAACAAGTACGGTGAAGGAAAATGGCATTTAATTCCTCAAAGATCTGGACTGAATAGGTGCAGAAAAAGTTGTAGATTGAGATGGTTAAATTATTTAAGCCCCAACATCAAAAGAGAAAGATTTTCTGAGGATGAAGTGGATATGATCCTAAGGTTACACAAACTCTTAGGGAATAGATGGTCAATGATTGCTGGAAGGTTACCAGGAAGAACAGCAAATGATGTGAAGAACTATTGGACCACATATTTAGCAAAGAAGGTTGCTTCagaaaaagatgaaaacaaagaaaaagaaaaacctaAGGAAACAATGAAAGCTCATGAAATCATTAAACCTAAACCTATAACTTTATCAACTCATCCAACTTGGTTGAAAGGGAAACATATTGTTTCTACTGATTTTGATGACTCATTAACTGTGGTTCCAGATCAAGTTGGAAGAGATTGTGCTTCTTCTTCACAAACAAATCTAGGGAATGCCCCAATACAGTCTGCTATGTGGTATGATAGTTTGTCGAATTTGGAGGAACAGTTGAACAGTGAAGAAATTGGTTCATGTTCTTCATTATTACCAGCAGAGGATAACTTTAAGGAGTTTCCAAATGTTGATGACTCACtttgggatttggattctctttGGGATCTTTAG 720 0.3444 MDNIGGLRKGAWSYEEDELLKACINKYGEGKWHLIPQRSGLNRCRKSCRLRWLNYLSPNIKRERFSEDEVDMILRLHKLLGNRWSMIAGRLPGRTANDVKNYWTTYLAKKVASEKDENKEKEKPKETMKAHEIIKPKPITLSTHPTWLKGKHIVSTDFDDSLTVVPDQVGRDCASSSQTNLGNAPIQSAMWYDSLSNLEEQLNSEEIGSCSSLLPAEDNFKEFPNVDDSLWDLDSLWDL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02045 239 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Tsu08g02045 239 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 188 - -
Tsu08g02045 239 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Tsu08g02045 239 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Tsu08g02045 239 SMART sant 8 58 IPR001005 -
Tsu08g02045 239 SMART sant 61 109 IPR001005 -
Tsu08g02045 239 CDD SANT 64 107 IPR001005 -
Tsu08g02045 239 ProSiteProfiles Myb-like domain profile. 7 56 IPR001005 -
Tsu08g02045 239 CDD SANT 11 56 IPR001005 -
Tsu08g02045 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 60 IPR017930 -
Tsu08g02045 239 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Tsu08g02045 239 Gene3D - 63 136 - -
Tsu08g02045 239 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 188 - -
Tsu08g02045 239 Gene3D - 3 62 - -
Tsu08g02045 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02045 Tsu-Chr8 27047888 27048806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02045 6 142 MYB Transcription Factor Family AT1G66370 62.676 2.02e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu08g02045 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02045 - K09422 mtr:MTR_7g017260 300.441