Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02022 ATGGCCACCATCACAACAGAACAAGACACCTCACGTGCTTCACACATGCACAACACCACCACAAACAACCAAGAGGACACAATTAACGACAGTGAGCCGGAGAATCACACCGATGAGgacaatgatgaagaagatgaagaagaagaacaacaacCTGTGAACTATAGAAGCTCAATAACTTCTGCAGGTATTAGTAGAATTGTGGACCCAAGAGCAAAATGGGTGCAAGAATGGAACAGAGTCTTCTTACTAGTATGTGCAGCTGGGTTGTTTGTAGACCCACTGTTCTTCTATGCTCTTAACATCAGTGACTCCTTTATGTGTCTCTTCATTGATGGATGGTTCGCCATCACCGTTACGGTGCTCCGTTGCATGACTGACGCTTTGCATCTTTGGAATATGTTTCTCCGCTTTAAGACGGTGAAACGCAGCTCGTTAACATTTGCCACCAGTTCGGCCACTACAGATGCCGGTTGTTCTGTTGCTCTTAGTTATCTTAAGTCCCGCCGTGGCTTCTTCTTTGACCTCTTCGTTATTCTTCCTATACCTCAGATTGTACTTTGGGTGGGAATTCCTTCTTTGTTGAAGCAAGGTTCAGTAACGTTGGTGATGACAATATTATTGATTGTATTTCTCTTTCAATACCTTCCCAAAATTTATCACTCGGTATGCCATCTTAGACGCACACAAAACCTCTCTGGCTACATTTTTGGAACTGTTTGGTGGGGCATTGCCCTTAACATGATCGCCTATTTTGTCGCTTCCCATGCTGCAGGGGCATGTTGGTACTTGTTGGGGATCCAAAGAGCAGCCAAATGTCTCAAAGAGCAATGTCTGAAAACAAATGGTTGCGGCAATCAAATATTGTCTTGTCATAAACCAATATATTATGGAAGTACAAGTTTGTTGAATAGGGATATTGCAAGATTGGCATGGGCAAAGAACAGGGAAGCAAGATCTACATGCTTAAATGGTCCTGATAACTTCAATTATGGTGCTTATAAATGGACTGTTCAACTTGTCACTAATGATAATCGATTAGAAAAAGTACTTTTCCCAATTTTTTGGGGACTAATGACTCTTAGCACTTTCGGAAATCTAGAGAGCACAACGGATTGGCTTGAAGTAGTTTTCAACATCATAGTCTTAACGAGTGGCCTTCTTCTTGTCACTATGTTGATTGGAAACATCAAGGTGTTTTTGCATGCAACAacatcaaagaaacaagttaTGCAATTGAAAATGAGGAATGTTGAGTGGTGGATGAGGAAAAAACATTTGCCACAAGGGTTTCGACAACGTGTGCGTAACTATGAAAGACAACGTTGGGCTGCTATGCGTGGGGTTGATGAGTGTGAGATGACCAAAAATCTTCCTGAAGGTTTAAGAAGAGACATTAAATACCATCTATGCCTTGATTTGGTGAGACAgGTGCCATTGTTTCAACATATGGATGAGCTGGTTCTAGAAAACATATGTGACCGAGTGAAATCTCTTATATTCACCAAGGGAGAAACAATAGCTAGAGAAGGAGACCCAGTTCAAAGAATGCTATTTGTAGTGAGGGGTCACCTTCAAAGTAGCCAAGTTCTAAGAGATGGGTTGCAAAGTTGTTGCATGTTAGGTCCAGGAAACTTTACTGGGGATGAGCTCCTTTCATGGTGTTTGAGGAGACCCTTTATAGAGCGACTTCCATTGTCAACATCAACACTTGTCACACTTGAAACAACAGAGGCTTTTGGTCTTGAAGCTGAGGATGTGAAGTATGTGACACAACATTTCAGGTACACATTTGTGAAGGAAAAGGTGAAGAGAAGTGCTAGGTATTACTCACCAGGTTGGAGAACATGGGGTGCTGTGGCAATTCAATTGGCATGGAGAAGATATAGGCATAGGTTAACTTTGAACTCATTATCATTTATAAGACCTAGGAGGCCCTTATCAAGATGTTCTTCATTGGGAGAGGATAGACTTCGACTCTACACAGCTTTGTTAACTTCGCCAAAGCCTAATCAAGAtgattttgacttttaa 2034 0.4051 MATITTEQDTSRASHMHNTTTNNQEDTINDSEPENHTDEDNDEEDEEEEQQPVNYRSSITSAGISRIVDPRAKWVQEWNRVFLLVCAAGLFVDPLFFYALNISDSFMCLFIDGWFAITVTVLRCMTDALHLWNMFLRFKTVKRSSLTFATSSATTDAGCSVALSYLKSRRGFFFDLFVILPIPQIVLWVGIPSLLKQGSVTLVMTILLIVFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKEQCLKTNGCGNQILSCHKPIYYGSTSLLNRDIARLAWAKNREARSTCLNGPDNFNYGAYKWTVQLVTNDNRLEKVLFPIFWGLMTLSTFGNLESTTDWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQVMQLKMRNVEWWMRKKHLPQGFRQRVRNYERQRWAAMRGVDECEMTKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDELVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGLQSCCMLGPGNFTGDELLSWCLRRPFIERLPLSTSTLVTLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWGAVAIQLAWRRYRHRLTLNSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDDFDF 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02022 677 Pfam Cyclic nucleotide-binding domain 501 588 IPR000595 -
Tsu08g02022 677 SUPERFAMILY cAMP-binding domain-like 406 594 IPR018490 -
Tsu08g02022 677 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 8 674 - -
Tsu08g02022 677 MobiDBLite consensus disorder prediction 1 28 - -
Tsu08g02022 677 MobiDBLite consensus disorder prediction 1 55 - -
Tsu08g02022 677 ProSiteProfiles cAMP/cGMP binding motif profile. 480 559 IPR000595 -
Tsu08g02022 677 Gene3D Helix hairpin bin 405 471 - -
Tsu08g02022 677 Pfam Ion transport protein 78 397 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu08g02022 677 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 8 674 - -
Tsu08g02022 677 SUPERFAMILY Voltage-gated potassium channels 70 401 - -
Tsu08g02022 677 MobiDBLite consensus disorder prediction 32 50 - -
Tsu08g02022 677 CDD CAP_ED 480 586 IPR000595 -
Tsu08g02022 677 Gene3D Jelly Rolls 478 596 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02022 Tsu-Chr8 26456098 26471066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02022 64 676 Ion Channels AT5G54250 78.029 0.0 1006
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02022 K05391 - gmx:100783341 1111.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02022 08 26456098 26471066 Tsu08g02022 08 26456098 26471066 ECH