Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01994 ATGGCACTGGGTTCAACTTTTGTTTCCTTGctaatattgttattttattgcCTGAATTTGTTTCACGTGAACGCAACATCCTACAAAGAGTTTCTACTAGTGGGGCAATCAGTAAGAAGTTCAGACACACTTGTTTCAAATGATGGAAATTACGAACTGGGATTTTTTACCAGAAAGAGAGAGAACACCACAAAGTACTACGTGGGTATATGGTTTAAAAAGGTACCAAATGACAAGATTGTTTGGGTTGCCAACAGAGTTTACGCAATCGAAACATCCTCGGCGTTGCTTACCATTCACACTGATGGTAACATAGTGATCATGGATGGACAGATGGTGTATGGCGTGACCGGTgttccaaacaaaaacaatggtATTAGTACCTACGCAACCCTCTTGGACACAGGAAACTTGGTACTGGTGAACACCTCAAATCAAGCAATTTTATGGCAGAGTTTTGATTACCCCACGGATACCCTTTTGCCTGGAATGAACCTAGGACAAGATACTGACACAGGTCACACTTGGTCATTGAGATCATGGAAGAGTACAGACGACCCTTCTCCAGGACTATATACACTCCATTATAATTTTGGCTTAGCGAGTCTATCGGTGAATAAAGGTTCTAAGCTTTTGCTGATTGATGgtaattcaaatttttctatTCAGAATGTTATTAATCGCGTACCAACAGAGAAACCTTTAAACCAACTGATTCCAAGAGAGAAAGGTTTTAACCAATTGAATTTGACACAAAGTTACAACAACTACTTTACAATTGGTAGCAATTCTCGTTTGGTATTGCAAGCGTCCGGGGATCTTAAATACGAAGCCTTGTCCAAGGAATCTAACCGTTGGCTTTTTCAATTCTCATCCAAGTGTTCCATAGACAACTCGTGTGGAATTTTTTCCATTTGTAATCCAGAAGCTGATGTTGATCCGTGTAAATGTCTTGAGGGTTTTAAACCCTTAGATGCTGATTCTTGGAGGCAGGGAAACAGGTCAGCTGGATGCGTCAGGATAGCGAACTTGTCCTGCAGTGGCAATAACAGTAAAGATGGATTCATACGGTTTATGTCAGTGGAATTACCTCCTCATcatgtgtacctgcaggtgGATGCAGTTGCACAATGTAATTCTATTTGCTTCGCTAGCTGTTCTTGTGTTGCTTATGCTTATGATTTTGACGGTACCTGCATGTTGTGGAATCATCAAGTACCAACTTTGAAGGACACCTCAATTGATattaaagatgatgatgataataataaacttttttttctcagACTTGCTGGCTCAGAGATCTCTATCACAAATTCTAACATAAAGAATGCAATTGGAAGACATGGAAACAGGAAAAGGAATCTACTTCTAATTGTTATTTTGATCTCATTTCTGCTCTTTCTTTTACTACTTGGCATGTTTTTTTACAGGACTAGAAAGCAAAGGAGTAAAGGGGAGGATTTGCTAAATTTTGAAGTAGGCATGAGCATGAAAGTTAATAAAGACTCTAACATAACTGACAAGGGTACAAAAATTAAGAGGAAAGAAGTCAAGTTGCCATTATTCAGTTTTGTAAGCGTTTCAACGGCAACTGATAACTTTTCTGATACAAATAAACTTGGCGAAGGTGGTTTTGGACCTGGTATATTATCGAATGGCGGTGAGGTTGCTGTAAAAAGGCTATCCCGAAGATCAGGTCAAGGATGGGAGGAGTTAAGAAATGAAGCATTATTGATTGCAAAACTCCAACATAATAATCTTGTTAGACTTCTTGGCTGTTGCATTGAGCGAGATGAAAAGATGCTTATTTATGAATTCATGCCGAATAAAAGCTTGGATTGTTTTCTCTTCGATGTAGTAAAAAGAAGGATGTTAGATTGGGAAACACGTGTTCGAATAATTGAAGGGATCGCCCAAGGTCTCCTTTATCTTCATCAATATTCTAGGTTTCGGATTATTCACCGAGATTTAAAAGCTAGCAACATATTGTTAGACACCAACATGAATCCGAAAATATCAGATTTTGGAATGGCTAGAATATTTGGTGTGAATGAACTTCAAGCAAATACAAATCGGATAGTTGGAACTTAtggCTACATGTCCCCTGAATATGCTATGGAAGGCATTTTCTCAATTAAGTCCGACGTGTTTAGCTTTGGAGTCCTTTTGTTAGAGATTATAAGTGGAAAGAAGAATACTGGTTTTTACCAAACAAACTCTTTCAATCTTCTTGGATATGCTTGGGATCTATGGACCAATGATTCTGGAATGGAGCTGATTGATTCAGAATTGGATGATATCTCTAGCAAGCATTTAGTACCAAGATATGTGAATATAGGACTTCTATGTGTTCAACAAAGTCCAGAAGATAGGCCAACTATGTCTGATGTTGTATCAATGATTGGTAATGACACTACATCCCTTCCAAGTCCAAAGCCACCAGCATTTCAAAATGTGAGAGGTATTGTTGAAAATACAAGACTACCTAAAAGCATAGAAGAAATTTTTTCTGTGAATGTTATCACAGATTCAATAGTTGAAGCAAGATGA 2553 0.3674 MALGSTFVSLLILLFYCLNLFHVNATSYKEFLLVGQSVRSSDTLVSNDGNYELGFFTRKRENTTKYYVGIWFKKVPNDKIVWVANRVYAIETSSALLTIHTDGNIVIMDGQMVYGVTGVPNKNNGISTYATLLDTGNLVLVNTSNQAILWQSFDYPTDTLLPGMNLGQDTDTGHTWSLRSWKSTDDPSPGLYTLHYNFGLASLSVNKGSKLLLIDGNSNFSIQNVINRVPTEKPLNQLIPREKGFNQLNLTQSYNNYFTIGSNSRLVLQASGDLKYEALSKESNRWLFQFSSKCSIDNSCGIFSICNPEADVDPCKCLEGFKPLDADSWRQGNRSAGCVRIANLSCSGNNSKDGFIRFMSVELPPHHVYLQVDAVAQCNSICFASCSCVAYAYDFDGTCMLWNHQVPTLKDTSIDIKDDDDNNKLFFLRLAGSEISITNSNIKNAIGRHGNRKRNLLLIVILISFLLFLLLLGMFFYRTRKQRSKGEDLLNFEVGMSMKVNKDSNITDKGTKIKRKEVKLPLFSFVSVSTATDNFSDTNKLGEGGFGPGILSNGGEVAVKRLSRRSGQGWEELRNEALLIAKLQHNNLVRLLGCCIERDEKMLIYEFMPNKSLDCFLFDVVKRRMLDWETRVRIIEGIAQGLLYLHQYSRFRIIHRDLKASNILLDTNMNPKISDFGMARIFGVNELQANTNRIVGTYGYMSPEYAMEGIFSIKSDVFSFGVLLLEIISGKKNTGFYQTNSFNLLGYAWDLWTNDSGMELIDSELDDISSKHLVPRYVNIGLLCVQQSPEDRPTMSDVVSMIGNDTTSLPSPKPPAFQNVRGIVENTRLPKSIEEIFSVNVITDSIVEAR 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01994 850 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 187 IPR036426 -
Tsu08g01994 850 SMART ntp_6 350 430 IPR003609 -
Tsu08g01994 850 Gene3D - 24 153 IPR036426 -
Tsu08g01994 850 CDD B_lectin 36 156 IPR001480 -
Tsu08g01994 850 ProSiteProfiles Bulb-type lectin domain profile. 29 153 IPR001480 -
Tsu08g01994 850 SMART serkin_6 535 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01994 850 PIRSF SRK 2 850 IPR024171 GO:0004674
Tsu08g01994 850 Pfam D-mannose binding lectin 80 182 IPR001480 -
Tsu08g01994 850 ProSiteProfiles Protein kinase domain profile. 535 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01994 850 CDD STKc_IRAK 541 802 - -
Tsu08g01994 850 SMART blect_4 35 156 IPR001480 -
Tsu08g01994 850 Gene3D Phosphorylase Kinase; domain 1 509 607 - -
Tsu08g01994 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672|GO:0006468
Tsu08g01994 850 SUPERFAMILY Protein kinase-like (PK-like) 520 820 IPR011009 -
Tsu08g01994 850 Pfam PAN-like domain 346 405 IPR003609 -
Tsu08g01994 850 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 26 847 - -
Tsu08g01994 850 CDD PAN_AP_plant 343 403 - -
Tsu08g01994 850 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 26 847 - -
Tsu08g01994 850 Gene3D Transferase(Phosphotransferase) domain 1 608 809 - -
Tsu08g01994 850 ProSiteProfiles PAN/Apple domain profile. 346 431 IPR003609 -
Tsu08g01994 850 Pfam S-locus glycoprotein domain 245 323 IPR000858 GO:0048544
Tsu08g01994 850 Pfam Protein tyrosine and serine/threonine kinase 539 801 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01994 Tsu-Chr8 26072741 26076076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01994 458 817 Receptor kinase-like Gene Family AT4G23190 53.388 3.11e-122 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g01994 PK_Tyr_Ser-Thr 3.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01994 - - mtr:MTR_8g061110 1046.19