Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01980 ATGGTAACTACAAAAAGGAGCAAACAATGGATTGTTATATCTGAAACAACCTTTTCAATAGCTATTATGGAGGTGATGCCCTTGTTTTGTGTTCTTGCCACAGCTTATGCACACGAGCTTCCTCAATTTGGTCTTGAAGTAGGTCTTACAAACTATGCTGCAGCCTATTGCACCGGTCTCCTTTTGGCTCGTAGAGTTCTTAGAACTCTTGAAATGGACGAGGAGTATGAGGGTAATTTAGAGGGGCTGTGGTAG 255 0.4235 MVTTKRSKQWIVISETTFSIAIMEVMPLFCVLATAYAHELPQFGLEVGLTNYAAAYCTGLLLARRVLRTLEMDEEYEGNLEGLW 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01980 84 SUPERFAMILY Translational machinery components 30 68 - -
Tsu08g01980 84 PANTHER PROTEIN L5, PUTATIVE-RELATED 30 81 - -
Tsu08g01980 84 CDD Ribosomal_L18_L5e 31 67 - -
Tsu08g01980 84 Gene3D - 11 83 - -
Tsu08g01980 84 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 31 80 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tsu08g01980 84 PANTHER RIBOSOMAL PROTEIN L5-RELATED 30 81 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01980 Tsu-Chr8 25805750 25808279 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01980 31 82 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 82.692 1.93e-26 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01980 K02932 - gmx:100786189 98.5969