Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01978 ATGGcgggagaagaagaagaacgatTCAACAACAATGGCGCCGAAACGAAGCATGGTGATGATGTAGAACGAGTAATCGCGGAAACGGCGTCGTTTCAGTGTTCGGTTAAAGAAAAACAAGCTTCGGAAGAAACGGCGTCGGTTCAACTTGATACCGCCGTGACACATTCTTCTGTTCAAATTGCCGCCGTTCCAGTTTCCGCTCCTGTTTCCGGCGGAAAGAGAAAGACGGCGGAAGGTGCTTCTTCCGTTGTTGCTTCAAGAAAGAGTGATCGTTGCAGAAAGAGTACCTTGGTGGCCATGGAAGCAGCACAGTGTGAGGAGCGTGGCGATGGTAGAAAAAGAAAGACAATTTCTGATAGAAAAAAAGGAATTTCTACTTCTGAGAAAGAGGAAAATGGTGGTGGTTAtatgaagaaagagaagaacaaaGCTGGTAGTAGAAAAAGGAAAGAGATTGATGAGAATTCTGAAAATGAAATGCGTTTTCCTGATAATAAAGGCTATGCTTTAAGACGAAATAGTGCTTCAAATATCAAACATAACAACACTACTCATGGGGTGGATCCAAAAATCGAAAAGAACAAGTGGATTGAAGAGGTGTCCTTAATGTGCCATCAATGTCAGAGAAATGACAAGGGCAGGGTTGTTAGATGCAAGAAATGTAGAAGGAAAAGATTTTGTGTATGCTGTATAAACAATTGGTATCCTCACTTGAAAGAGGATGATATAGCTGAGGCATGTCCTGTGTGCTGTGGTAATTGCAATTGCAAAGGTTGTTTGAAATCATCTAAACTTATCGAGGCAATTAAAGATAAGAAGGCAACCAACAAAGATCATGAGGTTGAGCTCTCCAAGTATATGCTGAAAATTCTTCTTCCGTATTTAATACGATTGGATCAAGAACAAATGGTCGAGAAGGAGATTGAAGCCAAGAGACAAGGGCTCCCACTCTCTGAGCTAAAAATCAAAGTAGCCGATTCATTTAATGATGAGCGCGTGTTCTGTGACAACTGCAAAACGTCAATATTTGACTACCACAGAAGCTGTACAGAATGCTCCTTTGACCTATGTCTTCTCTGTTGCTGCGAGCTTCGGCGTGGTCAACTTCTAGGTGGTACAGATCCATTTGATTTTGAGTTTATTTTCCGAGGGAAAAATTACCTGCATGGTGAAGACGCAAAGGAAACAATCAGAGAGAAAGTACCTCATGATGAGATTCGTGAATGGTCAAAATCTAGGTGGCATACAGATAGTGAAGGTAACATTCCCTGTCCAAAAGCCAATAACGAATGTGATCATGGTTACCTTGAACTGCGAAGCATATTTCAGCCGAATCGCATCTCTGAGTTAGTATGTGAAGCAAAAAAACTTGCAGAAACAATTAAACTTCAAGTAGCAGAGGAGCCTCTTGATAATAGGTGCTCTTGTTTGAAGTCTGTTCGGAACGCAGATGATATACACAATAACACAAGGGAAGCAGCTTTTCGTGTAGATATCAGTGGCAACATTTTGTACTGTCCTAGGGCTATAGATCTAAATCATGAAGGTTTAAAACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTCATTGTCAGCAATGTACTTGAATGTACTTCTGGTTTAAGTTGGGAGCCGCTTGTCATGTGGCGTGCATTTCGCCAGAGAAGGAATTCCAAGAACAAATCACTTTATGATGTGAAGGCACTTGATTGCTTAGATTGGTGCGAGGTAGATATTAATGTGCACCAATTCTTTACTGGGTACACAAATGGTCGCCAGGATTGGAAAGATTGGCCTCAGGTGTTGAAATTGAAAGATTGGCCTCCTTCTAATTTATTTGAGGAAAGTTTGCCTCGTCATTGTGCCGAGTTCATATCTTCCTTGCCGTTTAAAGAATATACAGATCCTTTCAAAGGTGCTCTTAACCTTGCTGTGAAGCTGCCGAATCATGTTCAAAAGCCAGACATGGGTCCAAAAACATATATTGCTTATGGATTTGCTCAGGAGCTTGGACGGGGTGATTCTGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTAAAGTGGAACTGGAACCTGCAACCAttcctaaaattaaaaaattgacacaAAAGCACCTTGAGCAAGACAACAGGGAGCTACATGCTCATAATCAGGATGGAGAAACAAGTGTTGACTTGGTTGATAATTTGTCGTCTTCCATAAATGCTTCAGACGGAGGGGATTCTTTAGACGGTGCTCTCTGGGATATTTTCCGGAGAGAGGACGTACCTGTATTGGAGGAATATCTGAATAAGCACTTCAAAGAGTTCAGGCATGTTCATTGCTCTCCATTAGAGGAGGTTATCCACCCTATACATGATCAGACCTTTTATCTAACCATCAAGCATAAGAAAAGGCTAAAGGAGGAGTATGGAATTGAGCCTTGGACTTTTGTTCAGAAACTAGGAGACGCTGTTTTCATTCCAGCTGGTTGCCCCCACCAAGTCAGAAATCTGAAGTCATGCATCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTGAGTGCTTCCATTTGACTGAGGAGTTTCGCAAACTTCCGGTAAATCACAGGTCCGCAGAGGACAAATTGGAGgtgaagaaaatgattataCATGCTATGGTTGATGTAGTCAACAACCTGGAGAAAACAAGGTCTGAGGAAACGGAAGTTCCATCGTAA 2736 0.4086 MAGEEEERFNNNGAETKHGDDVERVIAETASFQCSVKEKQASEETASVQLDTAVTHSSVQIAAVPVSAPVSGGKRKTAEGASSVVASRKSDRCRKSTLVAMEAAQCEERGDGRKRKTISDRKKGISTSEKEENGGGYMKKEKNKAGSRKRKEIDENSENEMRFPDNKGYALRRNSASNIKHNNTTHGVDPKIEKNKWIEEVSLMCHQCQRNDKGRVVRCKKCRRKRFCVCCINNWYPHLKEDDIAEACPVCCGNCNCKGCLKSSKLIEAIKDKKATNKDHEVELSKYMLKILLPYLIRLDQEQMVEKEIEAKRQGLPLSELKIKVADSFNDERVFCDNCKTSIFDYHRSCTECSFDLCLLCCCELRRGQLLGGTDPFDFEFIFRGKNYLHGEDAKETIREKVPHDEIREWSKSRWHTDSEGNIPCPKANNECDHGYLELRSIFQPNRISELVCEAKKLAETIKLQVAEEPLDNRCSCLKSVRNADDIHNNTREAAFRVDISGNILYCPRAIDLNHEGLKHFQWHWSKGEPVIVSNVLECTSGLSWEPLVMWRAFRQRRNSKNKSLYDVKALDCLDWCEVDINVHQFFTGYTNGRQDWKDWPQVLKLKDWPPSNLFEESLPRHCAEFISSLPFKEYTDPFKGALNLAVKLPNHVQKPDMGPKTYIAYGFAQELGRGDSVTKLHCDMSDAVNVLTHIAKVELEPATIPKIKKLTQKHLEQDNRELHAHNQDGETSVDLVDNLSSSINASDGGDSLDGALWDIFRREDVPVLEEYLNKHFKEFRHVHCSPLEEVIHPIHDQTFYLTIKHKKRLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFHLTEEFRKLPVNHRSAEDKLEVKKMIIHAMVDVVNNLEKTRSEETEVPS 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01978 911 MobiDBLite consensus disorder prediction 108 167 - -
Tsu08g01978 911 SMART cupin_9 619 869 IPR003347 -
Tsu08g01978 911 MobiDBLite consensus disorder prediction 108 168 - -
Tsu08g01978 911 Pfam JmjC domain, hydroxylase 756 852 IPR003347 -
Tsu08g01978 911 ProSiteProfiles JmjC domain profile. 638 869 IPR003347 -
Tsu08g01978 911 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 39 901 IPR045109 GO:0032454|GO:0033169
Tsu08g01978 911 MobiDBLite consensus disorder prediction 1 22 - -
Tsu08g01978 911 Gene3D Cupin 503 878 - -
Tsu08g01978 911 ProSiteProfiles Zinc finger RING-type profile. 205 251 IPR001841 -
Tsu08g01978 911 SUPERFAMILY Clavaminate synthase-like 508 893 - -
Tsu08g01978 911 MobiDBLite consensus disorder prediction 68 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01978 Tsu-Chr8 25776237 25783478 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tsu08g01978 JmjC 8.2e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01978 K15601 - gmx:100780803 1020.38