Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01975 ATGAAAATTCTCTATACCATGCTTGTTATTACTAagctactattattattcttctTCAAATTTTCCTCTGCTGCTGATACTATTACACAATCAGAATCACTTTCTGATGGAAGCACCTTGATTTCTAATGATGGAACCTTTGAATTGGGTTTCTTTAATCCAGGTAATTCACCAAACCGCTATGTTGGAATTTGGTACAAAAACATTCAAGTTAAAACAGTTGTTTGGGTTGCGAATCGTGATAATCCGATCAAAGATAACTCGAACTCGAGCAAGTTGACGATAAACAGACAAGGAAATCTTGTTCTTCTCAATAATAGTCAGTCTCTTTTATGGTCAACAAATGCAACAAAGAATGCTTCAATTCCAATTGTGCAACTCTTGAACAATGGAAATTTAGTTCTTCGAGACGAGAAAGACAATGAAGGTGATGGCGAAGAAGACGGTTTCTTGTGGCAGAGTTTTGATTATCCTTGTGATACATTATTACCAGGAATGAAGTTGGGATGGGACAAGAAAACCGGTATTAATAGACGTCTCACTGCATGGAAAAATTGGGAAGATCCGTCCTCAGGTGAATTTACTAATTCAATTAAACTTAACAAAAATCCTGAAATTGTGATGTATAAAGGTTCTGTTGAATTTTATAGAACAGGACCTATGATTGGTATTATGAATAGTGCTATTATGTCTAAAGGAGTTTTTGGGTTAAGGCCTAACCCACTTTATAATTATACATTTGTATTTAATGATGAGGAAGTGTATTATATGTATAACCTTAAGAACAGTTCTGTGATTACCATAGTTGTTTTGAACCAAACACTTTTGGTTCGTCAACGCCTCACTTGGATTCCGGAAACTAAAACATGGAATCTTTACCAGAATCTGCCACAAGACCGTTGTGATGCTTATAATGTTTGCGGTGCCAACGCAAACTGTGTCATTGGCGAATCACCAATGTGTCAGTGCTTAGATGGGTTTACGCCAAAATCAGCCGATAGATGGAATGCAATGGACTGGTCACAAGGATGTGTACGGATTGGAAATTGGACCTGTGGAGTCAAGAGTAGAGACGGTTTCCGTACAGTTGCTAAAATGAAGTTGCCAGATAGTACAAATTATTGGCTTAATGAAAATACGACGCTCGATAAATGCAAGGACAAATGTTTGCAAAATTGTTCCTGCACGGCTTACTCAATCTTAGCCGCAGATGATGGAAACAACGGATGTTCCATTTGGTTTGACGATCTTAAAGATTTGAGAGTTTCAGATGCTGGACAAGACTTGTATGTTCGAGCAGACGTTTCAGATATTGATGATGAACATGGGGGTATGAAAAAAGTAATTGTTGCAGTTTCAATCAGTGCTTCAATAGTCATTGTGATGCTATTAGCATTCAACATTTATAGAAAAAAGTATAAAGGTAATGATGATAAGTTAAACTCAATGTGGATGGAAGACAACAGTGAAAGTGAACATGATGATTTCGAGCTTCCTTTCTTTGATCTTGCTACAATACTAGATGCCACAGATAATTTCTCAATTCACAACAAACTCGGTGAAGGTGGTTTTGGACCGGTATATAAGGGTAAGTTTCTTGATGGCCAAGAAATTGCAGTCAAAAGGCTTTCTTGGGGTTCTGGACAAGGAATGAAAGAATTTAAGAATGAAGTTATATTATGTGCTAAACTTCAACATCGAAATCTTGTTAAAGTTCTTGGTTGTTGCATTGAAAAAGATGAGAAAATGCTAGTCTATGAATATATGTCAAACACAAGCCttgattcatttatttttgATCCAATTCAAAGTAGATTGTTAGATTGGTCTATGCGTTTTAACATCTTATATGGAATTGCACGTGGTCTTCTTTATCTACATCAAGATTCAAGATTAAGAATAATACACAGAGATTTGAAGGCAAGTAATATTCTATTAGATAGAGATATGAATCCAAAAATTTCAGATTTTGGCTTGGCTAAAATGTGTGGAGGCGACCAAATTGAAGGAAAGACAAATCGAATAATTGGCACATACGGTTATATGGCACCTGAATATGCCATTGACGGACTATTCTCTATCAAATCAGATGTTTTTAGTTTTGGCGTATTATTACTAGAACTTATAAGTGGGATGAAAAATAGAACACGTATCTACCATCAACATGATCACAATCTTATTGGACATgCATGGAGATTGTGGAAAGAGGGAATGATACATACATTGATTGATGAAAATTTGATGGAAACATGCAATTTAAATGAAGCTTTACGGTGCATTCAAATAGGACTTTTATGTTTACAACATCATCCAGATGATCGACCAAACATGACATCTGTAGTTGTGATGTTAAAAAGTAATAATGTTATACCTCAACCACAAGAGCCAGGTTATTTATTAAAAACTGCACCAATAGAAAGAGAGCTTTTTTCTTCGGATGGAGAAACATCATCTTCAATAAATCAagtaacaatttcgatattagATGTTAGATAG 2496 0.349 MKILYTMLVITKLLLLFFFKFSSAADTITQSESLSDGSTLISNDGTFELGFFNPGNSPNRYVGIWYKNIQVKTVVWVANRDNPIKDNSNSSKLTINRQGNLVLLNNSQSLLWSTNATKNASIPIVQLLNNGNLVLRDEKDNEGDGEEDGFLWQSFDYPCDTLLPGMKLGWDKKTGINRRLTAWKNWEDPSSGEFTNSIKLNKNPEIVMYKGSVEFYRTGPMIGIMNSAIMSKGVFGLRPNPLYNYTFVFNDEEVYYMYNLKNSSVITIVVLNQTLLVRQRLTWIPETKTWNLYQNLPQDRCDAYNVCGANANCVIGESPMCQCLDGFTPKSADRWNAMDWSQGCVRIGNWTCGVKSRDGFRTVAKMKLPDSTNYWLNENTTLDKCKDKCLQNCSCTAYSILAADDGNNGCSIWFDDLKDLRVSDAGQDLYVRADVSDIDDEHGGMKKVIVAVSISASIVIVMLLAFNIYRKKYKGNDDKLNSMWMEDNSESEHDDFELPFFDLATILDATDNFSIHNKLGEGGFGPVYKGKFLDGQEIAVKRLSWGSGQGMKEFKNEVILCAKLQHRNLVKVLGCCIEKDEKMLVYEYMSNTSLDSFIFDPIQSRLLDWSMRFNILYGIARGLLYLHQDSRLRIIHRDLKASNILLDRDMNPKISDFGLAKMCGGDQIEGKTNRIIGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLELISGMKNRTRIYHQHDHNLIGHAWRLWKEGMIHTLIDENLMETCNLNEALRCIQIGLLCLQHHPDDRPNMTSVVVMLKSNNVIPQPQEPGYLLKTAPIERELFSSDGETSSSINQVTISILDVR 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01975 831 PIRSF SRK 1 831 IPR024171 GO:0004674
Tsu08g01975 831 SMART ntp_6 355 433 IPR003609 -
Tsu08g01975 831 Pfam D-mannose binding lectin 73 184 IPR001480 -
Tsu08g01975 831 Pfam Protein tyrosine and serine/threonine kinase 514 783 IPR001245 GO:0004672|GO:0006468
Tsu08g01975 831 CDD STKc_IRAK 519 785 - -
Tsu08g01975 831 Pfam S-locus glycoprotein domain 216 331 IPR000858 GO:0048544
Tsu08g01975 831 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 33 824 - -
Tsu08g01975 831 CDD B_lectin 31 158 IPR001480 -
Tsu08g01975 831 ProSiteProfiles Bulb-type lectin domain profile. 25 148 IPR001480 -
Tsu08g01975 831 ProSiteProfiles PAN/Apple domain profile. 352 434 IPR003609 -
Tsu08g01975 831 Gene3D Transferase(Phosphotransferase) domain 1 589 794 - -
Tsu08g01975 831 Gene3D Hepatocyte Growth Factor 351 430 - -
Tsu08g01975 831 Pfam PAN-like domain 352 419 IPR003609 -
Tsu08g01975 831 SUPERFAMILY Protein kinase-like (PK-like) 496 799 IPR011009 -
Tsu08g01975 831 SMART blect_4 31 158 IPR001480 -
Tsu08g01975 831 ProSiteProfiles EGF-like domain profile. 297 333 IPR000742 -
Tsu08g01975 831 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 189 IPR036426 -
Tsu08g01975 831 SMART serkin_6 513 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01975 831 Gene3D Phosphorylase Kinase; domain 1 476 588 - -
Tsu08g01975 831 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 33 824 - -
Tsu08g01975 831 CDD PAN_AP_plant 351 432 - -
Tsu08g01975 831 ProSiteProfiles Protein kinase domain profile. 513 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01975 831 Gene3D - 20 155 IPR036426 -
Tsu08g01975 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Tsu08g01975 831 Pfam Domain of unknown function (DUF3403) 789 831 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01975 Tsu-Chr8 25762026 25764967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01975 501 829 Receptor kinase-like Gene Family AT4G23150 54.545 1.75e-121 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g01975 PK_Tyr_Ser-Thr 4.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01975 - - gmx:100790436 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01975 08 25762026 25764967 Tsu08g01975 08 25762026 25764967 ECH