Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01962 ATGGCTGAAGAACAATTTCAACCAAGTGGAAATTGGTGGGAGACTCCAGCTAGAAACATGAGGTATGAAAGtgttgaacaacaacaacaacaatcttcTTCCTTTGGTGGTTGGCAgcaccaacaacaacatcatgaTACTATGTCTGCTTCAGGTAGTTCCTCTGTGGTTTTCCATGATACTACACAAAAGCTTCAACCTTCAGATTCTTCAACTTCAAATAATGATTCCAACTTGCATATGATGGGTTTAGGACTTTCATCTCAAACCATTGATTGGAATCAAGCATCTTTATTAAGAGGTGAGAAGGCTTCAGAGGGAAGTTTTAGGTCTATGTTACAAGAAAATTTGAACACATCAAGCACAAATTTTGAGCAAGAAAGTGGTGGAGTTGGATTATCTCATCAAGTTAATTGGAGACAAGAAAAGTTATTCTCAAATGAATCTTCAAGCAATGAATTCAAGCAAGTGAATAGAGGTTTTTCTTTGGATCAAACACAATTTAGTCCTCAATATAGTTCTGGAGATAGTAACATGATAAGTCAAATGGATTCTTCAGCTTTATATGGTAACACTTCAATTTTACAAGGACTTTTAGGTAATGAAAGTAATCAAATTCAACCTCAACATAGTAATTCATTCGAGAATAGATCAATGAATTTTCCATACTCAACAACAAGCTATGGTTTGAGTACAAATGAGTTAATGCCTTCTTGGTCTAAATTAcctcatcaaaatcaaaaacaacaacCAAATAATCAATTGCATTTCACCAATAATGCTCCCTTTTGGAATGCTTCAGAGACTACTATTAAGGATGCTTCATCTAGCTTCTTGCCCCCATTTTCCACACCAAATTTTGGTGCACAGACAAAGAATATATCTGAAGGTAGGGACTCAAGTAGTGTAGTTAAAAAAAGTGGGAGTGAGCCTGCACCTAAAAGGTCAAGAAATGAAACCCCATCACCTTTGCCAGCTTTTAAGGTGAGAAAAGAAAAGATGGGTGACAGAGTCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCCTCGGTGCTCTCTGAAGCTATTGAATATATCAAATTCCTCCATGAACAAGTGACTGTTTTAAGCACCCCATACATGAAAAGTGGAGCTCCAATACAACATCAACAGAGTTCTGGTAAATCTAAAGAAGCAGAGGGTCCAAAGCAAGATCTTAGAAGCAGAGGATTATGCTTAGTACCTGTTTCTAGTACATTTCCAATGACTCATGAGCCCACAGTTGAATATTGGACACCAACATTTGGAGGAACTTTCagataa 1317 0.3523 MAEEQFQPSGNWWETPARNMRYESVEQQQQQSSSFGGWQHQQQHHDTMSASGSSSVVFHDTTQKLQPSDSSTSNNDSNLHMMGLGLSSQTIDWNQASLLRGEKASEGSFRSMLQENLNTSSTNFEQESGGVGLSHQVNWRQEKLFSNESSSNEFKQVNRGFSLDQTQFSPQYSSGDSNMISQMDSSALYGNTSILQGLLGNESNQIQPQHSNSFENRSMNFPYSTTSYGLSTNELMPSWSKLPHQNQKQQPNNQLHFTNNAPFWNASETTIKDASSSFLPPFSTPNFGAQTKNISEGRDSSSVVKKSGSEPAPKRSRNETPSPLPAFKVRKEKMGDRVTALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQSSGKSKEAEGPKQDLRSRGLCLVPVSSTFPMTHEPTVEYWTPTFGGTFR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01962 438 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 12 426 - -
Tsu08g01962 438 MobiDBLite consensus disorder prediction 287 331 - -
Tsu08g01962 438 MobiDBLite consensus disorder prediction 21 82 - -
Tsu08g01962 438 CDD bHLH_AtbHLH_like 324 375 IPR045239 -
Tsu08g01962 438 Gene3D - 328 390 IPR036638 GO:0046983
Tsu08g01962 438 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 318 367 IPR011598 GO:0046983
Tsu08g01962 438 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 12 426 - -
Tsu08g01962 438 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 328 385 IPR036638 GO:0046983
Tsu08g01962 438 MobiDBLite consensus disorder prediction 382 406 - -
Tsu08g01962 438 MobiDBLite consensus disorder prediction 287 307 - -
Tsu08g01962 438 MobiDBLite consensus disorder prediction 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01962 Tsu-Chr8 25305648 25309623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01962 100 438 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 44.359 1.09e-77 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01962 - - gmx:100778697 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01962 08 25305648 25309623 Tsu08g01962 08 25305648 25309623 ECH