Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01960 ATGGATCTTCTGTGCGACGCTTATTCGAATTCCTCAGACGAAGAAGAAAAACCCAAGCGACAGAAATTTTCACACACTTTCTCAAACCCACCAAAACCCTATCTCCCTTCACCTTCACCTTCTCCTCCTTCCAACCTCCATACCCAATCTCTCATTCCAGGTAGCTACGTTTCCAAACGCCAACGCGCATCTATGGCTTCCATCTCTACTTCCAACTCTGTTCCCCTTTCATCATCTTCCTTCACTCTATCTGGGAGTATCTCGGAAGCTGATATACCCCATAACATTGTAGCATTGTTGAAAAGTAAAGCAAATGGTCATCAAAACCTGAACTTGGTACCTGACAAGCTATCTGCAACTCTATCTGGACATACAAGAGCTGTCAATGCTATACATTGGTCGTCAACTCATGCTCACCTCCTTGCATCTGCTGGGATGGACAATACCGTTTGTATATGGAACGTATGGAGCAGAGATAAGAAGAAAGCATGTGCGCTAAACTTCCACAATGCTGCAGTGAAAGATGTAAAGTGGTCTCAACAAGGGCACTTCCTGCTTTCTTGTGGGTACGATTGCACATCAAGGTTGGTTGATGTTGAAAAAGGGACGGAAACTCAGGTTTTCATAGAAGACCAAATGGTTGGAGTTATAAAATTCCACCCAGACAATTCAAATATCTTCCTTTCTGGGGGGTCAAAGGGACATATTAAACTATGGGATATCAGAACTGGAAAAGTTGTGCATAACTACAATAGAAATTTAGGCTCTATTCTAGATGTTGAGTTTACAATGAATGGGAAGCAATTCATTTCTTCTAGTGATGTATCTGGGAGCAATATCAGCGAGCATTCGATTATTGTTTGGGATGTATCAAGACAGGTACCATTGTCTAATCAGGTTTATGTGGAAGCTTATACTTGTCCCTGTGTTCGACGGCACCCCTTTGATCCAGTTTTTGTTGCGCAGTCAAACGGGAATTATATTGCAATCTTTAGTACAACCTCACCATACAGACTCAACAAATATAAGAGATATGAGAACCATGGAGTTTCTGGGTTCCCAATTAAGTGCAATTTCAGCCTGGATGGGAAGAAGCTTGCTTCTGGTTCTTCTGATGGATCTATTTACCTTTATGATTATCAGTCCTCCAAagttttgaagaaaataaaggCCTTTGATCAAGCATGCTTGGACATTGCCTTTCACCCAGTTATGCCTAATGTTATTGCTTCATGCTCATGGGATGGAAGTATTTTGGTATTTGAGTAG 1269 0.4113 MDLLCDAYSNSSDEEEKPKRQKFSHTFSNPPKPYLPSPSPSPPSNLHTQSLIPGSYVSKRQRASMASISTSNSVPLSSSSFTLSGSISEADIPHNIVALLKSKANGHQNLNLVPDKLSATLSGHTRAVNAIHWSSTHAHLLASAGMDNTVCIWNVWSRDKKKACALNFHNAAVKDVKWSQQGHFLLSCGYDCTSRLVDVEKGTETQVFIEDQMVGVIKFHPDNSNIFLSGGSKGHIKLWDIRTGKVVHNYNRNLGSILDVEFTMNGKQFISSSDVSGSNISEHSIIVWDVSRQVPLSNQVYVEAYTCPCVRRHPFDPVFVAQSNGNYIAIFSTTSPYRLNKYKRYENHGVSGFPIKCNFSLDGKKLASGSSDGSIYLYDYQSSKVLKKIKAFDQACLDIAFHPVMPNVIASCSWDGSILVFE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01960 422 MobiDBLite consensus disorder prediction 1 51 - -
Tsu08g01960 422 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 422 - -
Tsu08g01960 422 SMART WD40_4 159 198 IPR001680 GO:0005515
Tsu08g01960 422 SMART WD40_4 114 154 IPR001680 GO:0005515
Tsu08g01960 422 SMART WD40_4 243 289 IPR001680 GO:0005515
Tsu08g01960 422 SMART WD40_4 340 379 IPR001680 GO:0005515
Tsu08g01960 422 SMART WD40_4 382 422 IPR001680 GO:0005515
Tsu08g01960 422 SMART WD40_4 201 240 IPR001680 GO:0005515
Tsu08g01960 422 ProSitePatterns Trp-Asp (WD) repeats signature. 141 155 IPR019775 -
Tsu08g01960 422 Gene3D - 98 422 IPR015943 GO:0005515
Tsu08g01960 422 SUPERFAMILY WD40 repeat-like 111 421 IPR036322 GO:0005515
Tsu08g01960 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 121 155 IPR001680 GO:0005515
Tsu08g01960 422 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 121 155 - -
Tsu08g01960 422 Pfam WD domain, G-beta repeat 217 240 IPR001680 GO:0005515
Tsu08g01960 422 Pfam WD domain, G-beta repeat 117 154 IPR001680 GO:0005515
Tsu08g01960 422 Pfam WD domain, G-beta repeat 347 379 IPR001680 GO:0005515
Tsu08g01960 422 Pfam WD domain, G-beta repeat 168 196 IPR001680 GO:0005515
Tsu08g01960 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 388 IPR001680 GO:0005515
Tsu08g01960 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 207 IPR001680 GO:0005515
Tsu08g01960 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 249 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01960 Tsu-Chr8 25244963 25255510 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01960 116 292 U-box Gene Family AT2G33340 26.374 1.52e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01960 K24742 - gmx:100790592 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01960 08 25244963 25255510 Tsu08g01960 08 25244963 25255510 ECH