Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01939 ATGGGCGATCATGTTGTGTTGTTTGTTGACCGTTTGGTTCGGCCTATGCCTGTTGAGCCATTGGCTCAACATCCGGCCGAACCTGCTCCTGAGCCGTTGCCGCTGGTGAATGTTACACCGGCGGGACCTTCCGGGTCCTTAGCGGAAGATtatgatgatgacgatgatgacAATGGAGAGGATGAGCCGCTGTTGCAGATGGCGGAGTGTCGGATTTGTCAGGATGATGATAGCATTAATAATTTGGAGAATCCATGTGGCTGTAGCGGTAGTCTTAAGTATGCTCATAGAAAGTGTATCCAACGCTGGTGCAACGAAAAAGGAGATACAACTTGTGAAATATGTCATAAGTCCTATGAACCTGGTTATACTGCTCCACCACCGCGGCCCGAAGAAACTACAATTGATATAGGTGGAGGCTGGACAATCTCTGGCACACCTTTGGACTTGCATGATCCTCGACTCTTGGCAATTGCAGAGGCAGAACGCCAATTCTTCGAAGCTGAATATGATGGATATGCCGCTTCTAATGCCAATGGAGCTGCATTTTGCCGTTCAGCTGCTCTAATTTTAATGGCCCTTTTACTCTTGAGGCACGCACTTTCTGTCACGGATGCTGATGCCGAAGATGATCCATCAACTTTTTTCTCTCTTTTCTTGCTTCGAGCCGCTGGCTTTCTTTTACCTTGCTATATCATGGCTTGGGCGATCAGTATTTTGCAACGAAGGCGACAAAGACAAGAGGCTGCAGCACTAGCTGCAACCCAACTTGCCTTCGTGCTACAATCCGGGCAGCATAGGGGTCTGCAATTCGCCATTGCACCAGCACAAACTTTGAATCCACACCTACACCAGGAACAAGTGTAG 867 0.4752 MGDHVVLFVDRLVRPMPVEPLAQHPAEPAPEPLPLVNVTPAGPSGSLAEDYDDDDDDNGEDEPLLQMAECRICQDDDSINNLENPCGCSGSLKYAHRKCIQRWCNEKGDTTCEICHKSYEPGYTAPPPRPEETTIDIGGGWTISGTPLDLHDPRLLAIAEAERQFFEAEYDGYAASNANGAAFCRSAALILMALLLLRHALSVTDADAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQLAFVLQSGQHRGLQFAIAPAQTLNPHLHQEQV 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01939 288 MobiDBLite consensus disorder prediction 22 37 - -
Tsu08g01939 288 CDD RING_CH-C4HC3_MARCH 70 116 - -
Tsu08g01939 288 ProSiteProfiles Zinc finger RING-CH-type profile. 62 122 IPR011016 GO:0008270
Tsu08g01939 288 SMART ringv_2 69 116 IPR011016 GO:0008270
Tsu08g01939 288 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 273 IPR033275 -
Tsu08g01939 288 SUPERFAMILY RING/U-box 68 120 - -
Tsu08g01939 288 MobiDBLite consensus disorder prediction 22 62 - -
Tsu08g01939 288 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 273 - -
Tsu08g01939 288 Pfam RING-variant domain 70 115 IPR011016 GO:0008270
Tsu08g01939 288 Pfam Protein of unknown function (DUF3675) 121 237 IPR022143 -
Tsu08g01939 288 MobiDBLite consensus disorder prediction 48 62 - -
Tsu08g01939 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 124 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01939 Tsu-Chr8 24862770 24865903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01939 69 116 C3H Transcription Factor Family AT2G37950 41.176 4.45e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01939 - - gmx:100817542 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01939 08 24862770 24865903 Tsu08g01939 08 24862770 24865903 ECH