Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01932 ATGGAAGAGAGAAATGATTGTGAGAAACTTGATGAGGTTATGCTTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAACTAGTTGGATTTTACCTAAAGAGAAAGATTCAACAACGCCCTCTTACTATTGAGCTCATCAAGCAGcttgatatttataaatttgatcCTTGGGATCTTCCAAAGTTGGCAAGTACTGGGGAGAAAGaatggtatttttattgtccAAGAGACAGAAAATACAGAAACAGTGCAAGACCTAATAGGGTAACAAAAGCTGGGTTTTGGAAAGCTACAGGAACAGACAGACCAATTTATTCATCAGAAGGTACTAGGTgtattggattgaagaaatcCTTAGTTTTCTACAAAGGTAGAGCTGCTAAAGGAGTCAAAACTGATTGGATGATGCATGAGTTTAGACTTCCTTCCATCATTGACTCATCATCATCTCCAAAGAAATATGTAGACAAGACCATTCCTGCTAATGAATCTTGGGCAATCTGCAGGATATTCAAGAAAACAAATGCTACAGCTCAAAGAGCTCTCTCTCACTCATGGGTCCCACCTTTACTTGAAACATCCACCTCCAATGTTCTAACAAATGATGGAAACCAAAACCAATTTTATTCATCTAACATGATGTTGACAAAAAAACCTATGATAAACCAATTTTGTACTACTAATAACCACAATAACACAACACAACAATTAACCACTTCTAGTAGTACAACACTTTGTCCTTTAGATATTACATCTTATAATGATAAACCAATTATTGATCCATTGATTTACAAACCTTTATACCGATTACCAATTTCAAATGATCAAGATCTTAACCTTAGTACTGGCTCACTATTCTCTTCTCCTATTGAAACATCTTGTAACAAAACATCAATGGATGTTTCTTCCTTGCTATTGGGTATGTCATCTGAAGGAACAACCTCAAACTACAATAATGGTTTACAAGATCACTACAACAATAATGGGTATCCATTCATGGCTAATATTGTTCCTCATAATATGAATGTTCCACATGTTGATGAACAAGAGTTGGAGACAGTAAGATCCATTGGATTTCCATTTACTATGCCTTTCAATATTGGTGATGCATGGAAATCAAGTCTTGTTTGGGATACTTCTTCTTGTACTTCTGATGAACCCTCTAGTTATTCTACTACCAAGTGTTATACTTAA 1194 0.3425 MEERNDCEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLTIELIKQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTKAGFWKATGTDRPIYSSEGTRCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSIIDSSSSPKKYVDKTIPANESWAICRIFKKTNATAQRALSHSWVPPLLETSTSNVLTNDGNQNQFYSSNMMLTKKPMINQFCTTNNHNNTTQQLTTSSSTTLCPLDITSYNDKPIIDPLIYKPLYRLPISNDQDLNLSTGSLFSSPIETSCNKTSMDVSSLLLGMSSEGTTSNYNNGLQDHYNNNGYPFMANIVPHNMNVPHVDEQELETVRSIGFPFTMPFNIGDAWKSSLVWDTSSCTSDEPSSYSTTKCYT 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01932 397 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 395 - -
Tsu08g01932 397 PANTHER PROTEIN FEZ ISOFORM X1 1 395 - -
Tsu08g01932 397 Gene3D NAC domain 23 178 IPR036093 GO:0003677|GO:0006355
Tsu08g01932 397 SUPERFAMILY NAC domain 13 173 IPR036093 GO:0003677|GO:0006355
Tsu08g01932 397 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Tsu08g01932 397 ProSiteProfiles NAC domain profile. 14 173 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01932 Tsu-Chr8 24557883 24560728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01932 1 262 NAC Transcription Factor Family AT1G26870 62.454 1.07e-110 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu08g01932 NAM 4.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01932 - - vun:114179488 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01932 08 24557883 24560728 Tsu08g01932 08 24557883 24560728 ECH