Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01929 ATGAATCCATCGGGTATTTATAAAAGGGAATTTGTTTGTCATCGTGGTGGTATTGTTAAACACCGCAAAACTAATGAAGTGGACTGCCAAAGAAACCGAAAATCTTCAAGATGTAATTGTAGTGCAAAGATGCTGGTTGCTATCAGTACAATTGGCGTTGAGGAAAAATGGGTGGTTAAGTATTTCAACAATGATCACAACCATGAGTTATTGGATGACAAAGAGGTTCAATTTCTTCCTGCTTATCGTAGCATCCCAATTGTTGATCAAAGTCGTATAATGTTGTTGTCGAAAGCCGGTTGCTCTATAAGTCTTATCGTGAGAGTGCTTGAATTAGAGAAAGAAATATGTACAGACAATCTACCATTTCTAGAGAAGGatattagaaattttattcaatcTCAGAGTGGTATTGGTAAAGAAAGTGATGCTTCAGATGTTCTTAAATTGTGCAAAAGTTTGAAAGATATAGATGACGCATTCAAATATGAATTTACAATTGATGAAAGTAACAAATTGGAGCATATTATTTGGGCATTTGGTGATTCAATTCGAGCATATGAAGCTTTCAGAGATGTTGTAGTTTTTGATACCACATATAGAATAAATCGTTATGATATGCCACTTGGGATATGGGTTGGTGTTGATAACCAtggaaataaaattttctttggtTGTGTTCTATTGAGAGATGAGAAAATTTCTTCCTTCACATGGGCTTTAAAgACTTTCCTAGCTTTTGTTGAAGGAAAATATCCAAAAACTATTCTTACGGATCAAGATCCCACACTTAAAGAAGCCATTGCAATGGAATTGCCAAATACGAAACATGCATTTTGCATATGGCATATTGTAGCAAAGTTGTCAAGTTGGTTTTCTTTTCCTCTAGTCAAAATTAGAACATGTTTTCCTATTGAGGAACATGCTGCATCTATTCTCACACCATATGCCTTTGGGTTGCTGCAACATGAGATTGAATTAGCTACAAAATATGCAGCAACTGAAACTGATAATGGCAATTATATTGTGCAACATCATACCAAAGTTGATGGTGGTTGTCTAGTAAGTTGGACAGTAGAAGAAGAGTTAATTAATTGCTCTTGCAAAGAATTTCAGTTTTCAGGAATATTGTGCAGACATGCTATTCGAGTGTTAATggtgaaaaattatttttccctTCCGTCAAAGTATCTTCCTTTTCGATGGAGACGAGAATGTTCATTGATCCCAAATTCTAGTCATGTAGTCAACAACAATAGTGGCTCCTCTGGAAAGTTTCAATCTCTAATTCAATGTTTGTTAGTTGAATCCTTAAAGACAAAAGAACGAGAGCAAGTAGCATCCACAAAACTAGAAAAAGTCATCCAAGAGCTAAAAAGTATGCCTGAAAATCAAGAACATGAGATGCATTTGGAACCTGATGTTCCAAATCATGATGGTTGTGATGTTGAAAATCCCATTCCCTCAAAATCCAAAGGTCGGCCAAAAGGATCAAGACCAAAAGGAGGAGTTGAAGTTGCAAAGAAGCCACGTCGTTGCCATGTTCCAAATTGTGGTGAATTTAATCATGACACACGAAATTGtccaaacaaaaagaaaaatcttgaATTGTCTTCTCAATCTCCTAATAAGTAA 1635 0.3425 MNPSGIYKREFVCHRGGIVKHRKTNEVDCQRNRKSSRCNCSAKMLVAISTIGVEEKWVVKYFNNDHNHELLDDKEVQFLPAYRSIPIVDQSRIMLLSKAGCSISLIVRVLELEKEICTDNLPFLEKDIRNFIQSQSGIGKESDASDVLKLCKSLKDIDDAFKYEFTIDESNKLEHIIWAFGDSIRAYEAFRDVVVFDTTYRINRYDMPLGIWVGVDNHGNKIFFGCVLLRDEKISSFTWALKTFLAFVEGKYPKTILTDQDPTLKEAIAMELPNTKHAFCIWHIVAKLSSWFSFPLVKIRTCFPIEEHAASILTPYAFGLLQHEIELATKYAATETDNGNYIVQHHTKVDGGCLVSWTVEEELINCSCKEFQFSGILCRHAIRVLMVKNYFSLPSKYLPFRWRRECSLIPNSSHVVNNNSGSSGKFQSLIQCLLVESLKTKEREQVASTKLEKVIQELKSMPENQEHEMHLEPDVPNHDGCDVENPIPSKSKGRPKGSRPKGGVEVAKKPRRCHVPNCGEFNHDTRNCPNKKKNLELSSQSPNK 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01929 544 Pfam MULE transposase domain 193 286 IPR018289 -
Tsu08g01929 544 MobiDBLite consensus disorder prediction 498 531 - -
Tsu08g01929 544 SMART 26again6 364 391 IPR006564 GO:0008270
Tsu08g01929 544 MobiDBLite consensus disorder prediction 470 544 - -
Tsu08g01929 544 Pfam SWIM zinc finger 361 387 IPR007527 GO:0008270
Tsu08g01929 544 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 301 466 - -
Tsu08g01929 544 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 5 296 - -
Tsu08g01929 544 ProSiteProfiles Zinc finger SWIM-type profile. 357 389 IPR007527 GO:0008270
Tsu08g01929 544 Pfam FAR1 DNA-binding domain 6 71 IPR004330 -
Tsu08g01929 544 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 301 466 IPR031052 GO:0006355
Tsu08g01929 544 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 5 296 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01929 Tsu-Chr8 24531931 24533981 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu08g01929 MULE 1.8e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01929 - - ccaj:109802755 464.922