Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu08g01907 | ATGGCTGATCTTCAGAAAACTGGTGTTGGCGACAGTAGGGATATCGAGCAGGCAATTACATCTCTTAAGAAAGGTTCTTATCTACTAAAGTATGGACGAAGAGGGAGGCCAAAGTTCTGTCCTTTTAAGCTTTCCAATGATGAGTCGCTACTCATATGGTACTCTGACaaggaagaaaaacaaattaagctCAGTACTGTTTCAAAGATCATTCCTGGGCAGCGAACTGCAACATTTCAGCGGTATCCTCGACCTGAAAAGGAGTATCAGTCATTTTCTCTTATATACAATGATAGGTCCTTGGATTTGATCTGCAAGGacaaagaagaagctgagatcTGGTTTGCCGGTCTGAAAGCATTAGTTATCCGAGGTAACTACCGCAAGTGGCGATTTGAACCAAGACCTGAAAGTCTCTATTCTGATAGTCCAAAGTCTAGCACAAGAAGATCCAGTCCATCATTTCCACCATCTgaTCCTGGAGATATTGACCGAGtttcttttcaaaattcttcGCCAAATAAATGGGTAAAGGCTTTCTCTGAAATAATTTCATACACTGCGCCTAGCAAGAGCTACAGTCGAGCCGAATCAATTACCAATTCCTCTATTTCCTCCTCGGGGTCCGTGGATAACTCGAGCAATCGAAATTCTGCATCTGAGGCAATTCGATTCAGTTTATCCAGTGCTGTAAGTTCATCCAGCCAGAGTTCTTGTCATGAAGATATTGATGCTTTAGGAGATGTTTTTATTTGGGGAGAAGGCATCAATGATGGAATTCTTGGTGGTGGCCTGCACAGGGTTGGAAACTTATCTATTTCAGAGATGGATGCATTCATTCCCAAGGCACTGGAATCAAAAGTGGTTCTAGATGTTCATAGTATTGGTTGTGGCTATAAACATGCTGTTCTAGTTACCAAGCAGGGAGAAATATTTAGCTGGGGCGAGGAGTCAGGAGGCAGGCTTGGCCATGGTGCAGAAGTGGATGTTTTTCACCCTAAGCTCATTGATAGTCTTAACGGCACGAACATTGAGTTAGTAGCATGTGGAGAATATCATACTTGCGCTGTTACTTGTTCTGGGGATCTTTATACCTGGGGTGATGGTATGCACAATTCTGGGTTACTTGGGCATGGAAATGAAATTAGTCAATGGATTCCTAAGAAAGTAAGTGGTGCATTGGAAGGATTACGTGTATCATATGTGTCCTGCGGACCTTGGCACACAGCTATTGTTACATCAGCCGGGCAGTTGTTTACCTTTGGTGATGGAACTTTTGGTGCCTTAGGCCATGGAGATCATACCAGCTCAAATATTCCCCGGGAAGTAGAAACTTTGAAAGGGTTGAGAACAACTAGGGTTTCATGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGTGATAAATGAATCCGTGGATTCTTCTATGCAGTCATCTATTGGAAGACTGTTCACCTGGGGTGATGGGGATAAAGGCCAACTTGGATATGTTGATAAGAAACCTAGACTAGTTCCTTTGTGTGTAATTGCACTGGCTAATGAAAACATTTGTCGTGTAGCTTGTGGCCACAGTCTTACAGCTGCATTGTCAACATCGGGACATGTATATACAATGGGCAGTACAGCTTACGGACAACTTGGTTGTCCTGCAGCAAGTGGGAAGGCTCCTACACGTGTTGAAGATAAAATTGCTGACAGTTTCATAGAAGATATCGCCTGTGGTTCGTATCATGTTGCAGTCCTGACTTCCAAGGCAGAGGTTTACACATGGGGAAAAGGTTTAAATGGGCAATTAGGTCATGGTGACAATGGTCACAGGAATAAACCCACACATGTCgagtttttaaaagataagcaagtgaagagtGTTTTTTGTGGTTCAAACTTTACTGCTGTTGTTTGCCTTCATAAATGGATACCGAGTGTTGATTATTCTGCATGTTCAGGCTGTCATAATCCAtttaatttcataagaaaaCGTCATAACTGTTACAACTGTGGACTTGTTTTTTGCAAATCATGCACCAGGAAGAAATCTATGAAGGCTTCCCTTGCTCCAAATTCCAACAAGACATATCGTGTTTGCGATGACTGTTATCATAGACTTAGGAAAGCTGCTGAATCAGTATCCTTGCAAACACCTAGCTGGAAAAGTGTCAGTTTGCATGACAATAAAGCCGCTAAAACACAGGGATCACTATTAAGACTTTCATCGTTTGGTTCTGTTGTTCAATCAGAAATCAGTCACTCAAAGCTTCCAGATTCTCACGATAGCCAGATTTTTCCAGCTTTTAATGGAAAACTACAACTGGGGGGTTTTGttatttcaaaatcatcaaactCTCTTTCTGGGGAATCGAGGAAATACGTGTCTGTTTCTGAGCTTGCTGCAAGAATTTCTTGTCAGTCAACCTCTCCAGTTTCATCAAAGTCAAGCCCACGACAATCTTGTGAAGATATTATACATGATGATTTAAAACACAGAAATGATATTCTAAGTCATGaagttataattttaaaagCACAGGTTGAAGATCTTACTCGGAAGTCAAAAAGTCTTGAGTCTGAATTGGAGAGAACATCAAAGCAATTGAAGGAAGTGACTGCAGTAGCTGCAGATGAAGCTGGAAAGTGTAAATCTGCAAAAGAAGTTATAAAGTCATTGACAGCTCAGTTGAAGGAAATGATGCAAAGATTACCAGGACATAATGCTGACTCAAGCTCAGATTCCTATGTTGAAACCAGTAATAGGATTGTTGATCAATCCTTAGATGAGAGTCATATAACAAACATTATCACTGCCAAAAATGAACGCGGCAGTGACGCAGAAAATATGGCATTTCCTAATGGTGCCACAACACAAAGTGGAAAGGCAGAATTGGTGGTACAAGATGAACCAGGCGTGTACGTAAGTTTGTCCCCCCTTCCAGGTGGTGGTAATGAACTTAAGCGCGTTCGCTTCAGTCGAAAGCAATTCACAGAAGAAGAAGCTGAAGATTGGTGGGCCGAAAATGGTACTAAAGTATTGGAGCGGCACAATATAGTTGCCTTGTAG | 3054 | 0.4047 | MADLQKTGVGDSRDIEQAITSLKKGSYLLKYGRRGRPKFCPFKLSNDESLLIWYSDKEEKQIKLSTVSKIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKEEAEIWFAGLKALVIRGNYRKWRFEPRPESLYSDSPKSSTRRSSPSFPPSDPGDIDRVSFQNSSPNKWVKAFSEIISYTAPSKSYSRAESITNSSISSSGSVDNSSNRNSASEAIRFSLSSAVSSSSQSSCHEDIDALGDVFIWGEGINDGILGGGLHRVGNLSISEMDAFIPKALESKVVLDVHSIGCGYKHAVLVTKQGEIFSWGEESGGRLGHGAEVDVFHPKLIDSLNGTNIELVACGEYHTCAVTCSGDLYTWGDGMHNSGLLGHGNEISQWIPKKVSGALEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDHTSSNIPREVETLKGLRTTRVSCGVWHTAAVVEVINESVDSSMQSSIGRLFTWGDGDKGQLGYVDKKPRLVPLCVIALANENICRVACGHSLTAALSTSGHVYTMGSTAYGQLGCPAASGKAPTRVEDKIADSFIEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNGHRNKPTHVEFLKDKQVKSVFCGSNFTAVVCLHKWIPSVDYSACSGCHNPFNFIRKRHNCYNCGLVFCKSCTRKKSMKASLAPNSNKTYRVCDDCYHRLRKAAESVSLQTPSWKSVSLHDNKAAKTQGSLLRLSSFGSVVQSEISHSKLPDSHDSQIFPAFNGKLQLGGFVISKSSNSLSGESRKYVSVSELAARISCQSTSPVSSKSSPRQSCEDIIHDDLKHRNDILSHEVIILKAQVEDLTRKSKSLESELERTSKQLKEVTAVAADEAGKCKSAKEVIKSLTAQLKEMMQRLPGHNADSSSDSYVETSNRIVDQSLDESHITNIITAKNERGSDAENMAFPNGATTQSGKAELVVQDEPGVYVSLSPLPGGGNELKRVRFSRKQFTEEEAEDWWAENGTKVLERHNIVAL | 1017 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu08g01907 | 1017 | Coils | Coil | 836 | 870 | - | - | |
| Tsu08g01907 | 1017 | Coils | Coil | 878 | 898 | - | - | |
| Tsu08g01907 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 247 | 308 | IPR000408 | - | |
| Tsu08g01907 | 1017 | CDD | FYVE_like_SF | 646 | 699 | - | - | |
| Tsu08g01907 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 309 | 360 | IPR000408 | - | |
| Tsu08g01907 | 1017 | ProSiteProfiles | BRX domain profile. | 958 | 1013 | IPR013591 | - | |
| Tsu08g01907 | 1017 | Gene3D | - | 13 | 128 | IPR011993 | - | |
| Tsu08g01907 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 585 | 636 | IPR000408 | - | |
| Tsu08g01907 | 1017 | SUPERFAMILY | RCC1/BLIP-II | 245 | 638 | IPR009091 | - | |
| Tsu08g01907 | 1017 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 295 | 305 | IPR000408 | - | |
| Tsu08g01907 | 1017 | MobiDBLite | consensus disorder prediction | 137 | 167 | - | - | |
| Tsu08g01907 | 1017 | ProSiteProfiles | PH domain profile. | 21 | 123 | IPR001849 | - | |
| Tsu08g01907 | 1017 | MobiDBLite | consensus disorder prediction | 140 | 155 | - | - | |
| Tsu08g01907 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 311 | 327 | IPR000408 | - | |
| Tsu08g01907 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 402 | 418 | IPR000408 | - | |
| Tsu08g01907 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 522 | 540 | IPR000408 | - | |
| Tsu08g01907 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 580 | 601 | IPR000408 | - | |
| Tsu08g01907 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 418 | 432 | IPR000408 | - | |
| Tsu08g01907 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 361 | 377 | IPR000408 | - | |
| Tsu08g01907 | 1017 | CDD | PH_PLC_plant-like | 13 | 123 | - | - | |
| Tsu08g01907 | 1017 | Gene3D | - | 474 | 642 | IPR009091 | - | |
| Tsu08g01907 | 1017 | SUPERFAMILY | FYVE/PHD zinc finger | 637 | 717 | IPR011011 | - | |
| Tsu08g01907 | 1017 | SMART | PH_update | 22 | 125 | IPR001849 | - | |
| Tsu08g01907 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 416 | 467 | IPR000408 | - | |
| Tsu08g01907 | 1017 | SMART | fyve_4 | 633 | 704 | IPR000306 | GO:0046872 | |
| Tsu08g01907 | 1017 | Pfam | FYVE zinc finger | 637 | 703 | IPR000306 | GO:0046872 | |
| Tsu08g01907 | 1017 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 643 | 713 | IPR013083 | - | |
| Tsu08g01907 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 481 | 532 | IPR000408 | - | |
| Tsu08g01907 | 1017 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN | 16 | 1011 | - | - | |
| Tsu08g01907 | 1017 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 958 | 1012 | IPR013591 | - | |
| Tsu08g01907 | 1017 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 16 | 1011 | - | - | |
| Tsu08g01907 | 1017 | Pfam | Transcription factor BRX N-terminal domain | 873 | 906 | IPR027988 | - | |
| Tsu08g01907 | 1017 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 454 | 464 | IPR000408 | - | |
| Tsu08g01907 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 309 | 357 | IPR000408 | - | |
| Tsu08g01907 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 360 | 411 | IPR000408 | - | |
| Tsu08g01907 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 481 | 529 | IPR000408 | - | |
| Tsu08g01907 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 416 | 464 | IPR000408 | - | |
| Tsu08g01907 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 532 | 581 | IPR000408 | - | |
| Tsu08g01907 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 586 | 633 | IPR000408 | - | |
| Tsu08g01907 | 1017 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 641 | 703 | IPR017455 | - | |
| Tsu08g01907 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 361 | 415 | IPR000408 | - | |
| Tsu08g01907 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 533 | 584 | IPR000408 | - | |
| Tsu08g01907 | 1017 | SUPERFAMILY | PH domain-like | 14 | 121 | - | - | |
| Tsu08g01907 | 1017 | Pfam | Pleckstrin homology domain | 16 | 122 | IPR001849 | - | |
| Tsu08g01907 | 1017 | Gene3D | - | 372 | 473 | IPR009091 | - | |
| Tsu08g01907 | 1017 | Gene3D | - | 181 | 371 | IPR009091 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu08g01907 | Tsu-Chr8 | 24191594 | 24205655 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu08g01907 | 956 | 1014 | Major Intrinsic Protein MIP | AT1G31880 | 47.458 | 4.43e-13 | 70.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu08g01907 | - | - | pvu:PHAVU_003G066900g | 1336.63 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu08g01907 | 08 | 24191594 | 24205655 | Tsu08g01907 | 08 | 24191594 | 24205655 | ECH |