Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01904 ATGTCAAGTAGAAGATCTCGTTCGAGACAATCTGATGTTGCCACTGAAATCTCTGATGCTCAAATTAATGATTTGGTAACCAAGTTACAACAACTTATTCCTGAACTTGCAAGGCGTTCCAACAAgGTTTCAGCTACTAAAGTGTTGCAAGAGACTTGCAATTACATCAAAAACTTGCATAGAGAGGTTGATGATCTAAGTGACCGGTTGTCACAACTTTTGGACACCATAGACCCTAACAGTGCTCAAGCAGCTATCATTAGGAGCTTACTTATGTGA 279 0.3943 MSSRRSRSRQSDVATEISDAQINDLVTKLQQLIPELARRSNKVSATKVLQETCNYIKNLHREVDDLSDRLSQLLDTIDPNSAQAAIIRSLLM 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01904 92 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Tsu08g01904 92 Pfam Helix-loop-helix DNA-binding domain 21 59 IPR011598 GO:0046983
Tsu08g01904 92 CDD bHLH_AtPRE_like 17 76 - -
Tsu08g01904 92 Gene3D - 4 84 IPR036638 GO:0046983
Tsu08g01904 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 83 IPR036638 GO:0046983
Tsu08g01904 92 Coils Coil 56 76 - -
Tsu08g01904 92 PANTHER TRANSCRIPTION FACTOR PRE6 1 92 - -
Tsu08g01904 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 59 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01904 Tsu-Chr8 24091059 24093441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01904 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 69.149 7.87e-37 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu08g01904 HLH 6.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01904 - - gmx:100791371 139.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01904 08 24091059 24093441 Tsu08g01904 08 24091059 24093441 ECH
Tsu08g01904 08 24091059 24093441 Tsu04g00141 04 1330691 1332310 ECH
Tsu08g01904 08 24091059 24093441 Tsu06g02077 06 25981734 25986206 ECH