Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01891 ATGCCATTTTCAGGGATAGAACTTGGAGAAGAAGCTAATGTCGAAGAAGAATTATCGGACGATGGATCACAATTAGGGGAGAAGAAAAGAAGGCTAAACATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAATTGGGAAACAAACTTGAACCTGAGAGGAAAATGCAGCTAGCAAGGGCTCTTGGACTACAACCAAGACAGATTGCTATATGGTTTCAAAACAGAAGGGCTAGATGGAAGACAAAACAGTTGGAAAAAGATTATGATGTTCTTAAAAGACAATATGATACTATTAAGGCTGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACAGAGATATTGGCACTGAAAAGTAGAGAACCAACTGAATCAATCAACCTTAATAAAGAAACAGAAGGATCAAGCAGTAACAGAAGTGAAAACAGTTCAGATATCAAATTGGATATTTCAACAAGGACACAAGTTATTGATAGTCCTTTATCTACTCAACAAACAAGCATAAACCTTTTTCCATCTTCTTCTAGACCAACAGGAGTTCCTCATCAGCTCTTTCAAACAAATTCAAGACAAGACATTCAATGTCAAAAGATTGATCATATGGTTAAAGAAGAGAGTTTGAGTAATATGTTTTGTGCCATTGATGAACAATCTGGATTATGGCCATGGTTGGAGCAGCAACATTTCAATTGA 702 0.3647 MPFSGIELGEEANVEEELSDDGSQLGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDTIKADNDALQAQNQKLQTEILALKSREPTESINLNKETEGSSSNRSENSSDIKLDISTRTQVIDSPLSTQQTSINLFPSSSRPTGVPHQLFQTNSRQDIQCQKIDHMVKEESLSNMFCAIDEQSGLWPWLEQQHFN 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01891 233 MobiDBLite consensus disorder prediction 1 30 - -
Tsu08g01891 233 PRINTS Lambda-repressor HTH signature 63 79 IPR000047 GO:0003677
Tsu08g01891 233 PRINTS Lambda-repressor HTH signature 54 63 IPR000047 GO:0003677
Tsu08g01891 233 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 233 IPR045224 GO:0003700
Tsu08g01891 233 CDD homeodomain 28 84 IPR001356 GO:0003677
Tsu08g01891 233 ProSiteProfiles 'Homeobox' domain profile. 23 83 IPR001356 GO:0003677
Tsu08g01891 233 ProSitePatterns 'Homeobox' domain signature. 58 81 IPR017970 GO:0000981|GO:0006355
Tsu08g01891 233 Pfam Homeodomain 28 81 IPR001356 GO:0003677
Tsu08g01891 233 MobiDBLite consensus disorder prediction 128 150 - -
Tsu08g01891 233 MobiDBLite consensus disorder prediction 131 150 - -
Tsu08g01891 233 Pfam Homeobox associated leucine zipper 83 123 IPR003106 GO:0006355|GO:0043565
Tsu08g01891 233 SUPERFAMILY Homeodomain-like 22 85 IPR009057 -
Tsu08g01891 233 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 2 233 - -
Tsu08g01891 233 Coils Coil 75 123 - -
Tsu08g01891 233 Gene3D - 20 89 - -
Tsu08g01891 233 SMART HOX_1 26 87 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01891 Tsu-Chr8 23509364 23512503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01891 6 233 Homeobox Transcription Factor Family AT1G69780 65.690 1.89e-100 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu08g01891 Homeodomain 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01891 K09338 - gmx:100801479 392.119