Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01888 ATGATGGATgtgaagaaggagaaggaaCAGGGCAATGCAGAATCGTCTAAGAAGAAGGAGCGTCGTATTGTGACTTGGACCCAAGAGGAGGATGTGATACTAAGAGAACAGATTGGAAATCATGGAACTGAAAAtTGGGCAATTATTGCATCCAACTTCAAGGACAAAACAACAAGACAGTGCAGAAgaagATGGTACACATATTTGAATTCTAATTTCAAGAAAGGTGGATGGACACCAGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAGTATTTGGGAACAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTAAAAAATCGTTTCTCCACACTCCgcaagaagagagaaaaatctGCAGCATTAGAAAAAGAGAACATCATTCCGTACATTGATTCTAATAGCAAGAGGAATATTTCCCATCAAGGTTATAATACAAATGCAATGTCAGAATCTGCTATGCCAgttaaaaaaatgagGAGGGCCCATATTCCTGATGGTGCGAACAAGATCAACTTTGGCGACAGATCACATTTGCGAAATGCAGTTTCAACAAATCAGCAGCCAAGCGCACCACTTTCCGAAACAAATCAGCAGCCAAGGGCACCACTTTCCGAATTAGCTAAAGAATCCAATTGTGTGAGCAATCTTCCAGACAGGCATCATATTGTCAATGACAAGTTCAACAATTCTGGCCAAAATGACAAAAGTCAGCTCAAAAAGGATGATCCGAAGATAAGTGCATTGATTCAAATAATTGATTCAGAGAACATGGAAAATTTATGGAAGCCACTTCTAGAGTTTCTGAACCGAACAGATATCATTggagaaaaaattgaagttttacaGCTTGTAAGTCGTACGTTCAAGGAGTTGAAGAGTAGTACTAATGAGAGAGGCCATTCCGGCTTGAGGAAAATGGAACCAGACGAAGATTCTCCAGGAAGTTCTGAATACAGTTCAGGATCAACTCTTTTGCCTAAGTCCACTGGTACTGGTGATAATTTGGAAAGCTCATTGAATCAGGATACTGGAACTGAAATGAAAGCTACACAATTTGGAGTTAAAAAAGAAGAGTGTGAAGATGTGGAAGGGGTTCTTTCTACTGGAAAAGTGGAACAAGATATGATGCCACACGGTGAGGAACAGATAAATCCATCGTCAAGAATGGAGTGTTCCCCTCTTCAAGTTACCCCTATTTTTAGATCCTTGGCTGAAGGAATTCCTACTCCAGAATTTTCAGAAAGTGAAAAGAACTTCCTGAGGAAAACACTGGGAGTAGAGTCTCCATCTATCAATACAACTTTCAGTCCGTTCAAATTGCCACCATGCATAAGATCCCTTCAATATGATATATGA 1380 0.3819 MMDVKKEKEQGNAESSKKKERRIVTWTQEEDVILREQIGNHGTENWAIIASNFKDKTTRQCRRRWYTYLNSNFKKGGWTPEEDMLLCEAQKVFGNRWTEIAKVVSGRTDNAVKNRFSTLRKKREKSAALEKENIIPYIDSNSKRNISHQGYNTNAMSESAMPVKKMRRAHIPDGANKINFGDRSHLRNAVSTNQQPSAPLSETNQQPRAPLSELAKESNCVSNLPDRHHIVNDKFNNSGQNDKSQLKKDDPKISALIQIIDSENMENLWKPLLEFLNRTDIIGEKIEVLQLVSRTFKELKSSTNERGHSGLRKMEPDEDSPGSSEYSSGSTLLPKSTGTGDNLESSLNQDTGTEMKATQFGVKKEECEDVEGVLSTGKVEQDMMPHGEEQINPSSRMECSPLQVTPIFRSLAEGIPTPEFSESEKNFLRKTLGVESPSINTTFSPFKLPPCIRSLQYDI 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01888 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 69 IPR017930 -
Tsu08g01888 459 SUPERFAMILY Homeodomain-like 23 116 IPR009057 -
Tsu08g01888 459 MobiDBLite consensus disorder prediction 321 352 - -
Tsu08g01888 459 CDD SANT 25 69 IPR001005 -
Tsu08g01888 459 PANTHER TRANSCRIPTION FACTOR MYB88 5 259 - -
Tsu08g01888 459 ProSiteProfiles Myb-like domain profile. 18 69 IPR001005 -
Tsu08g01888 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Tsu08g01888 459 SMART sant 22 71 IPR001005 -
Tsu08g01888 459 SMART sant 74 122 IPR001005 -
Tsu08g01888 459 MobiDBLite consensus disorder prediction 192 219 - -
Tsu08g01888 459 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Tsu08g01888 459 Gene3D - 76 149 - -
Tsu08g01888 459 Gene3D - 14 74 - -
Tsu08g01888 459 PANTHER TRANSCRIPTION FACTOR MYB88 298 456 - -
Tsu08g01888 459 PANTHER MYB PROTEIN-RELATED 5 259 - -
Tsu08g01888 459 MobiDBLite consensus disorder prediction 299 352 - -
Tsu08g01888 459 MobiDBLite consensus disorder prediction 299 320 - -
Tsu08g01888 459 MobiDBLite consensus disorder prediction 1 21 - -
Tsu08g01888 459 MobiDBLite consensus disorder prediction 192 250 - -
Tsu08g01888 459 CDD SANT 78 119 IPR001005 -
Tsu08g01888 459 Pfam Myb-like DNA-binding domain 26 86 - -
Tsu08g01888 459 PANTHER MYB PROTEIN-RELATED 298 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01888 Tsu-Chr8 23416591 23424557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01888 12 312 MYB Transcription Factor Family AT2G02820 48.466 6.87e-86 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu08g01888 Myb_DNA-bind_6 7.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01888 K09422 - gmx:100807667 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01888 08 23416591 23424557 Tsu08g01888 08 23416591 23424557 ECH