Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01886 ATGAAGAAATTGTGGCTTTCTTTTTCTCACTTATTTCCTACActcattcttctttttcttattcCAATTATTCCAACTTCAATTGCACAATTGACACAAACTGAAACTAGAATTCTTTTCCAAGTTCAGAAGCTTCTAGAATATCCACAAGTTCTTCAAGGATGGAACAATTGGACAAACTTCTGTTTCCTTCCGCCGTCTCCTTCAGTCAAAATAGTTTGTTCGAACGGTCACATAACCGAATTAACTGTCATTGGAAACAGAACTTCTCCGTCTTCGCATAGTTCCAAACCTTTTCAAGCACTTTCCGGAACTTTCTCAACTGATTCATTTTTCACTGTTATGACAAAGCTTTCAAATTTGAAAGTTTTGTCATTAGTTTCATTAGGATTATGGGGTCCATTACCCGAAAAAATCAACCGGTTTTCATCTCTCGAAGTATTGAACGTTAGTTCGAATTTCATTTCTGGTGAAATTCCGACTTCAATATCTtcaatgaaaaatttgaagagTATTGTTTTGGCAGATAATCTATTGAATGGAAATATTCCAGATCTCAAAAGCTTAACTTCTCTTGAAGAGGTTAATTTTGATGGAAACAAATTAGGTCCTCAATTTCCTTCACTAGGAAAAAATCTTGTGAAAATTATCTTGAAAAAAAACTCTATAAGATCTCAAATTCCTCCTCAGTTTATTATACACTTTGATAAGCTTCAAATATTTGATATTTCTTCAAATAATTTTGTTGGAAAAATTCCATTTTCTATGTTTTCTTTACCTTCACTTCATTACTTAAATTTGTCTTCAAACAAATTTAGTGGTAATCTTTCAATGAATTTACCTTGTAGTTCATCATTGAATTATGTGGATATTTCACATAATTTTCTAGTAGGAAAATTACCATCATGCATTTTGAAATCAAAGGCTAAAGTATTGTATATTGGGAATTgtttaacaacaaaaaagttgAATGATCAACAACATGGTTCTTCATATTGCAAAAAAGATGCAGCTTTAGCAGTTAAGCCACTTAAAAGAAAGGAGAAGAAGGAATCAAGTATGAAATTGGGTCTTGTACTTGTTATTGTTGGAGGTGTTGTTGGAATTGCATGTGTATTGGCTTTGCTTATTGTGTTCATCTTGTGGAAATCCAAACCAGAAAGATTGAATCATAATATGGATAGATCTGCTGCTCACAAGTTTtcagaaaaatcaaatattaatgcAAGACATGTTCCTCAAACAATGAGGCAAGCTACACATGGACAACCACCATACAATATTTTcacagaagaagaaattgaagatgcaACAAATAACTTTGACCAATCAAATTTAATAGGAGAAGGATCACAAGGACAgATATATAAAGGTTGGTTGAGAGATGGTTCAATGGTCCTGATTAATTGtataaaaataaagcaaaaggGTTTACCTCACAGCATTATGCAACAATTAGATGTATTACAAAATTTGAGGCATAGACATATGGTGAGTGTTCTAGGACATTGTATTATTACTCATCATGAACTTCCTCAAGTAACAAGCACAGTCTTCATTGTACTTGAATACATCTCAAATGTGACATTGAGGGATCAACTCACAGATGGGAAAAAGAAGGAAATACTGAAATGGCCACAAAGAATGGCAATAAGCATTGGAATTGCAAGAGGAGTTCAGTTCTTACATACAGGAGTTGCTCCTGGAATATTTGGCAACAATTTCAAGATTCAGAATATTTTGTTGGATGATAGTCTTAATGCAAAAGTCAGTGGATACAGAATTCCATTACCATCCAAGAGCACAGTTAATGAACAAAGTGCCACCAATCAAATTGCCAGCACAAGTAATGCAGAAAAAGAAGATATTTATCAGCTTGGTGTTATTCTACTTGAAGTCATCACTGGTACACAAATTGCATCCTCTAGTGATGTAGAGCAGCTCAAGGATGAGCTGGAAagaggttcatcagaagcaccATCAACAATACTAAGAAGTGCAATTGATCCTTCATTGAGAGGAAGTTATGCATATGAATCAATGAGTACTGCAGTTCAAATTACACTCAATTGTCTCTCTAAGGTATCTAGTACACGTCCTTCAATAGAGGATGTTCTTTGGAATTTACAATATTCAATGCAAGTTCAAGAGAATTGGACTAGCAGTGGGAACCTCAGCACAAAATTCTAA 2190 0.3187 MKKLWLSFSHLFPTLILLFLIPIIPTSIAQLTQTETRILFQVQKLLEYPQVLQGWNNWTNFCFLPPSPSVKIVCSNGHITELTVIGNRTSPSSHSSKPFQALSGTFSTDSFFTVMTKLSNLKVLSLVSLGLWGPLPEKINRFSSLEVLNVSSNFISGEIPTSISSMKNLKSIVLADNLLNGNIPDLKSLTSLEEVNFDGNKLGPQFPSLGKNLVKIILKKNSIRSQIPPQFIIHFDKLQIFDISSNNFVGKIPFSMFSLPSLHYLNLSSNKFSGNLSMNLPCSSSLNYVDISHNFLVGKLPSCILKSKAKVLYIGNCLTTKKLNDQQHGSSYCKKDAALAVKPLKRKEKKESSMKLGLVLVIVGGVVGIACVLALLIVFILWKSKPERLNHNMDRSAAHKFSEKSNINARHVPQTMRQATHGQPPYNIFTEEEIEDATNNFDQSNLIGEGSQGQIYKGWLRDGSMVLINCIKIKQKGLPHSIMQQLDVLQNLRHRHMVSVLGHCIITHHELPQVTSTVFIVLEYISNVTLRDQLTDGKKKEILKWPQRMAISIGIARGVQFLHTGVAPGIFGNNFKIQNILLDDSLNAKVSGYRIPLPSKSTVNEQSATNQIASTSNAEKEDIYQLGVILLEVITGTQIASSSDVEQLKDELERGSSEAPSTILRSAIDPSLRGSYAYESMSTAVQITLNCLSKVSSTRPSIEDVLWNLQYSMQVQENWTSSGNLSTKF 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01886 729 Pfam Leucine rich repeat 212 272 IPR001611 GO:0005515
Tsu08g01886 729 Gene3D Ribonuclease Inhibitor 211 348 IPR032675 -
Tsu08g01886 729 Gene3D Ribonuclease Inhibitor 31 210 IPR032675 -
Tsu08g01886 729 PANTHER RECEPTOR-LIKE KINASE FAMILY PROTEIN, PUTATIVE-RELATED 6 722 - -
Tsu08g01886 729 Gene3D Transferase(Phosphotransferase) domain 1 525 724 - -
Tsu08g01886 729 Gene3D Phosphorylase Kinase; domain 1 400 512 - -
Tsu08g01886 729 SUPERFAMILY Protein kinase-like (PK-like) 420 709 IPR011009 -
Tsu08g01886 729 PANTHER OS07G0166700 PROTEIN 6 722 IPR045272 GO:0004714|GO:0006468
Tsu08g01886 729 SUPERFAMILY L domain-like 61 320 - -
Tsu08g01886 729 Pfam Protein kinase domain 442 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01886 729 ProSiteProfiles Protein kinase domain profile. 441 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01886 Tsu-Chr8 23323978 23328410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01886 27 649 Miscellaneous Gene Families AT2G02780 47.465 2.16e-178 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Tsu08g01886 Pkinase 3.1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01886 - - cam:101490224 1102.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01886 08 23323978 23328410 Tsu08g01886 08 23323978 23328410 ECH