Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01883 ATGTCGCATTTGCAGTTACAGCTACACTCACAAGCACCACCACCATCACTCTTCTCATCATCTCGttcttctcttaagcttttcacaaacaaaaacaactctTTCTCTCCAACAAACTCTCTTCCTTTCAAACCCTTCACTATCAGATGCCGCCACTCTGACGTCTTCGAAACCAGAACCAACGTTTCCTCACCAAATCCTAACTCTTCAgtTGGAGCTTTGCCACCTAGGGTTTATGTTGGTCATTCCATTTATAAAGGGAAGGCTGCTCTCACTATCACTCCAAGACCACCGGAATTCGTGCCTTTGGATTCAGGGGCATATAAGATAACTAAGGATGGTTACCTGCTGCTTCAGTTTGCGCCCTCTCTTGGACCGCGGCAATATGATTGGAATAGTAAACAGATTTTCTCGTTATCTGTAGCTGAAATGGGAAGTGTGATTAGCCTTGGTGGAAGGGAGTCCTGTGAATTTTTTCATGATCCTTTTATGGGAAAAAGTGATGAAGGCAAAGTCAGAAAGGTTTTCAAGGTTGAACCTTTGCCGGATGGTTCTGGTTACTTCTTTAACCTCAATGTTCAAAACAAGATTATAAATGTGGATGAAACCATCAATCTCCCTATATCAAAAGCAGAGTTGGCAGTTCTGCGCTCAATTTTCAAGtaTATCATGCCATACCTTCTAGGTTGGCATACCTTTGCAAACTCCATAAATCCAGAGTATTCTGCTGTGGCGAACAATGCTAATCCGACATATGGAGGAGACTATGAATGGAACAGATAG 783 0.4087 MSHLQLQLHSQAPPPSLFSSSRSSLKLFTNKNNSFSPTNSLPFKPFTIRCRHSDVFETRTNVSSPNPNSSVGALPPRVYVGHSIYKGKAALTITPRPPEFVPLDSGAYKITKDGYLLLQFAPSLGPRQYDWNSKQIFSLSVAEMGSVISLGGRESCEFFHDPFMGKSDEGKVRKVFKVEPLPDGSGYFFNLNVQNKIINVDETINLPISKAELAVLRSIFKYIMPYLLGWHTFANSINPEYSAVANNANPTYGGDYEWNR 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01883 260 Gene3D Transcriptional Coactivator Pc4; Chain A 72 248 IPR009044 GO:0003677|GO:0006355
Tsu08g01883 260 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 50 260 IPR013742 GO:0003697|GO:0006355|GO:0006952
Tsu08g01883 260 SUPERFAMILY ssDNA-binding transcriptional regulator domain 76 260 IPR009044 GO:0003677|GO:0006355
Tsu08g01883 260 Pfam Whirly transcription factor 84 219 IPR013742 GO:0003697|GO:0006355|GO:0006952
Tsu08g01883 260 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 50 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01883 Tsu-Chr8 23310364 23314024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01883 44 260 Whirly Transcription Factor Family AT1G14410 68.349 1.03e-111 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Tsu08g01883 Whirly 2.7e-58 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01883 - - gmx:100789252 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01883 08 23310364 23314024 Tsu08g01883 08 23310364 23314024 ECH