LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g01881	ATGTTCCACACTCCGTTTCGCATACTTAATTTTCCATGCACAAAACCTCCACATCTAAACATTCACATCTTTCTTTCCCTTCGTTCACCAACCTTCCTTTGCTCATTCAATCACGATTCCTTTTCTACCCCAAAATCAACCGAGTTTGGTTACAGTCCTCCAGAGGATCTTTTTGGGCTGGAGGTGGAACTCAAGCCAAGgaaagCTAACTCTCATATAAGAGAACCAAGGTCTTGGTTTGGTCCAAATGGACAGTATATCAGAGAGCTACCTTGTCCAAGTTGCCGAGGAAGGGGTTATACTCCTTGTACAGAATGTGGAATAGAAAGATCTAGGTCAGACTGTCCAGAATGTAATGGAAAGGGTTTACTGACTTGCCACCAGTGCTCTGGAGATTGTGTTATATGGGAAGAATCAATTGATGAACGACCATGGGAGAGAGCTCAATCAATaTCTCCGCTTAAAGTGAAGGAAGACGATGAAGTTGACAAATTAGACATAAAGCTTGATGTGAAGAAAAAATCCAAGCGTGTTTACCAGTCACCGTCTCCTGAAGTCGGATTAAAGATTAGTCGTTCATTAAAAAGTCTCAATGCCAAAACTGGTCTATTTAGCAAACATATGAAGATCATCCACCAGGATCCAATTCTTCAGGCACAAAGAGTGATTGCTATCAAGAAAGCTAAGAGAACTGCGTCAGCAAGAATGCATGCTTCCGAAACTATGAAAAAATTCTTTAGTGATCCAATAAACCGTCAAAAAAGGAGCATGGCCATGAAAGGCGTGAAATTCTACTGCCAAAACTGCGGACGTGAAGGACATAGGAGACACTATTGTCCGGAACTCAAGGATGGTTTGGTTGATCGGAGATTCACATGTAAGCTATGTGGTGAAAAAGGGCACAACCGAAGGACATGCATTAAGTTAAGGATAAGCCATACTGATGGGAGAGTTATAAAACACCATCGATGTAAAATATGTCAACAATATGGCCATAACAGAATGACATGCCCTCGAGTTGTTTCGAATAACAGAACAGACGCAACATCTCAAAGAATATACAAATGTCGATTGTGCCAGGAAGAGGGACACAATATTAGAACATGTCCTAGAAGAATAGTTGGTATTGAACATTCTCAAAATTAA	1146	0.4066	MFHTPFRILNFPCTKPPHLNIHIFLSLRSPTFLCSFNHDSFSTPKSTEFGYSPPEDLFGLEVELKPRKANSHIREPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPECNGKGLLTCHQCSGDCVIWEESIDERPWERAQSISPLKVKEDDEVDKLDIKLDVKKKSKRVYQSPSPEVGLKISRSLKSLNAKTGLFSKHMKIIHQDPILQAQRVIAIKKAKRTASARMHASETMKKFFSDPINRQKRSMAMKGVKFYCQNCGREGHRRHYCPELKDGLVDRRFTCKLCGEKGHNRRTCIKLRISHTDGRVIKHHRCKICQQYGHNRMTCPRVVSNNRTDATSQRIYKCRLCQEEGHNIRTCPRRIVGIEHSQN	381

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g01881	381	Gene3D	-	262	309	-	-
	Tsu08g01881	381	ProSiteProfiles	Zinc finger CCHC-type profile.	266	281	IPR001878	GO:0003676\|GO:0008270
	Tsu08g01881	381	PANTHER	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	44	373	-	-
	Tsu08g01881	381	SUPERFAMILY	Retrovirus zinc finger-like domains	318	372	IPR036875	GO:0003676\|GO:0008270
	Tsu08g01881	381	SUPERFAMILY	Retrovirus zinc finger-like domains	263	308	IPR036875	GO:0003676\|GO:0008270
	Tsu08g01881	381	Pfam	Zinc knuckle	354	370	IPR025829	-
	Tsu08g01881	381	Gene3D	-	319	374	-	-
	Tsu08g01881	381	PANTHER	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	44	373	-	-
	Tsu08g01881	381	SMART	c2hcfinal6	323	339	IPR001878	GO:0003676\|GO:0008270
	Tsu08g01881	381	SMART	c2hcfinal6	355	371	IPR001878	GO:0003676\|GO:0008270
	Tsu08g01881	381	SMART	c2hcfinal6	265	281	IPR001878	GO:0003676\|GO:0008270
	Tsu08g01881	381	SMART	c2hcfinal6	292	308	IPR001878	GO:0003676\|GO:0008270

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g01881	40	374	C2H2 Transcription Factor Family	AT5G20220	62.974	2.34e-155	442

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g01881	-		-	cam:101493936	577.785

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu08g01881	08	23266599	23271345	Tsu08g01881	08	23266599	23271345	ECH