Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01880 ATGGAGCTTGCACTTGTGAAAAATGAATTAAGTCCAAGAAGTCATAGATTGCTCATGTTGGAAGCTGATTCTGTTGTAACTACTAAATGTGTCAAAAGGCGGCGAAGAGATTCGAGTATTGTACAACAAGGTGATGTATCAGAAATACAGCAGCCAATGAGTGGACAAGCAACTACTGTGAAGAGAAGCTCCAAGTTTAGAGGTGTTAGCAGGCATGTGTGGACTGGAAGGTATGAAGCTCATTTATGGGATAAAGGAACATGGAATCCAactcaaaagaaaaaaggaaagcAAGGAGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTCAAGTACTGGGGAACATCAACTTTTACAAATTTTCCTGTATCTGATTATGAGAAAGAAATTGAGATAATGATTACTATGACCAAAGAAGAGTATCTTGCTTCTTTGAGAAGGAGGAGCAGTGGTTTTTCTAGAGGTGTTTCAAAATATAGAGGGGTAGCAAGACACCATCACAATGGAAGATGGGAGGCAAGGATTGGTAGAGTTTTCGGCAACAAGTATCTCTACCTCGGGACTTATGGTACACAAGAAGAGGCGGCTCGTGCGTATGATATCGCAGCAATTGAATACCGAGGCATAAATGCAGTAACAAACTTTGATTTAAGCACCTACATTAGATGGTTAAGGCCAGGACCAAATTCAACTACTTCACAAGAACAAAAGCAAAACACAGAACTTCGAGTACCTTTTGCAGCCACTAATTCAATCCAAACAAGAACAAACATTGATGCATCCAACCCCAAACTCAATCCAGAAAAGCTTTTGCAAGTTGAAACTACAAAGAAGCAAGACTTTTCCAACTTTATGATGACGCCTTTAAGTTCTTGCAATAAACCAGCTTCACCAACAGCATTAGGACTTCTACTAAAATCCTCGGTATTTAGAGAACTAATGCAGAGAAATCTGAATTGTTCTAGTGAAGACGAAGAAGAAGTTGAATTGAAATACCCTCAAGAAAGTATTGGaggggtttttgaaattgaaaacaacaGTAACATTTATTTGTGCTCTTCTAATGTCAACAAGTTACCTAATTTGGTGTCATCAGAAGATGGGTCATCGCCTATGTATCATGGAACTATGCAATCTCTATCAAGATTCGAATCCCGGTTGGGAAAAGTGTCCACATTTAGTACACAACAGTGCCTCAAATAG 1221 0.3792 MELALVKNELSPRSHRLLMLEADSVVTTKCVKRRRRDSSIVQQGDVSEIQQPMSGQATTVKRSSKFRGVSRHVWTGRYEAHLWDKGTWNPTQKKKGKQGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMITMTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGPNSTTSQEQKQNTELRVPFAATNSIQTRTNIDASNPKLNPEKLLQVETTKKQDFSNFMMTPLSSCNKPASPTALGLLLKSSVFRELMQRNLNCSSEDEEEVELKYPQESIGGVFEIENNSNIYLCSSNVNKLPNLVSSEDGSSPMYHGTMQSLSRFESRLGKVSTFSTQQCLK 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01880 406 ProSiteProfiles AP2/ERF domain profile. 164 222 IPR001471 GO:0003700|GO:0006355
Tsu08g01880 406 SUPERFAMILY DNA-binding domain 163 224 IPR016177 GO:0003677
Tsu08g01880 406 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 389 - -
Tsu08g01880 406 SMART rav1_2 164 228 IPR001471 GO:0003700|GO:0006355
Tsu08g01880 406 SMART rav1_2 65 134 IPR001471 GO:0003700|GO:0006355
Tsu08g01880 406 CDD AP2 163 224 IPR001471 GO:0003700|GO:0006355
Tsu08g01880 406 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Tsu08g01880 406 PRINTS Ethylene responsive element binding protein signature 204 224 IPR001471 GO:0003700|GO:0006355
Tsu08g01880 406 Pfam AP2 domain 64 120 IPR001471 GO:0003700|GO:0006355
Tsu08g01880 406 Pfam AP2 domain 163 214 IPR001471 GO:0003700|GO:0006355
Tsu08g01880 406 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 389 - -
Tsu08g01880 406 ProSiteProfiles AP2/ERF domain profile. 65 128 IPR001471 GO:0003700|GO:0006355
Tsu08g01880 406 Gene3D AP2/ERF domain 64 130 IPR036955 GO:0003700|GO:0006355
Tsu08g01880 406 Gene3D AP2/ERF domain 163 224 IPR036955 GO:0003700|GO:0006355
Tsu08g01880 406 SUPERFAMILY DNA-binding domain 64 130 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01880 Tsu-Chr8 23262278 23265686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01880 61 226 AP2-EREBP Transcription Factor Family AT5G17430 69.231 2.93e-78 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tsu08g01880 AP2 1e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01880 - - gmx:100799621 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01880 08 23262278 23265686 Tsu08g01880 08 23262278 23265686 ECH