Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01857 atggcgAGATCACTcaacattttcatattttttctttgtttggaaATCATCACTCCTACATTGAATGCCAATATATTAGAGAGTAAAGAATTTTGGAAGGAAGAACGACCTGAGTTTGATTCATATTGGCAGGAAAGGGCTGTAGAAGCAAAACAATTCAATGAGGCAGCTTATTTCCCTGATCCATTTGCAGTCTCTGGCAATTTTACAGCTTCCATTACAGAAATTATTGCTGGAAAGGGCGCGAGAAGGAACTTGAGGGGAAACAAAGAGGGAGGACAATGTCTGGCCACAAACCCCATTGATAGATGTTGGAGGTGTGACCCAAATTGGGCTGATAACCGCCAAAAGTTAGCCGATTGTGTCCAAGGATTCGGCAGAAACACTCGTGGAGGTAAAGGCGGTCCAATCTATGTTGTCACCGATCCTTCTGACGACGATTTGATGAACCCCAAACCCGGCACTCTCCGTCACGCAGTCACACGTAATGGACCCCTTTGGATCATATTCGCTCGCAACATGCTCATCACACTACAACAAGAACTTATCATGAATAGTGATAAGACCATTGATGGTAGAGGAGTCGATGTTTTCATTGCCAATGGTGCCGGTATTACCATTCAATTTGTTAAGAATATTATCATCCATGGAATTAAGGTTTACGACATTCAAGTACGCGAAGGTGGTACTATTAGAGATTCTGAGACCCATTATGGTTTTAGGACTAGGAGTGATGGTGATGGTATTTCCATATTTGGTTCTAGCAATGTTTGGATTGATCATGTTTCCATGAGAAATTGTACTGATGGTTTGATTGATGCAATCATGGGATCTACTGCTATTACCATTTCCAACGGTCACTTCACCGACCACAATGagGTGATGCTTTTTGGTGCTAGTCCAGATCATAAAATGGACAAGATCATGCAAATCACATTAGCATTCAACCACTTTGGAAAGAGATTAGTACAAAGGATGCCAAGGGCAAGATTTGGATTTGTCCATTGTGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCCAGAACCCTACACTTATTAGTGAGGGTAATAGATTTATTGGCCCAGAAAACAAAATGGTAGGTAAAGACCTTATTAATTCTAAAGAAGTAACAAAGAGAGAATACACCGAGGAAAGTGAATGGAAAAGCTGGCAATGGAGATCAATCAACGATGAATTTTTGAACGGCGCTTACTTTATTCAATCTGGACCAGAGCTAAAGGACAGACCATTTTCAAGGAAAGACATGATAACGGCTAAACCGGGAAGTTATGTTGGAAGACTTACACGATTTGCCGGAAACCTACGATGCAGTGTGGGTAAACCTTGTTAG 1368 0.4035 MARSLNIFIFFLCLEIITPTLNANILESKEFWKEERPEFDSYWQERAVEAKQFNEAAYFPDPFAVSGNFTASITEIIAGKGARRNLRGNKEGGQCLATNPIDRCWRCDPNWADNRQKLADCVQGFGRNTRGGKGGPIYVVTDPSDDDLMNPKPGTLRHAVTRNGPLWIIFARNMLITLQQELIMNSDKTIDGRGVDVFIANGAGITIQFVKNIIIHGIKVYDIQVREGGTIRDSETHYGFRTRSDGDGISIFGSSNVWIDHVSMRNCTDGLIDAIMGSTAITISNGHFTDHNEVMLFGASPDHKMDKIMQITLAFNHFGKRLVQRMPRARFGFVHCVNNDYTHWEMYAIGGSQNPTLISEGNRFIGPENKMVGKDLINSKEVTKREYTEESEWKSWQWRSINDEFLNGAYFIQSGPELKDRPFSRKDMITAKPGSYVGRLTRFAGNLRCSVGKPC 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01857 455 PANTHER PECTATE LYASE 18-RELATED 4 455 IPR045032 GO:0030570
Tsu08g01857 455 SUPERFAMILY Pectin lyase-like 99 446 IPR011050 -
Tsu08g01857 455 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Tsu08g01857 455 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Tsu08g01857 455 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Tsu08g01857 455 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Tsu08g01857 455 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Tsu08g01857 455 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Tsu08g01857 455 PRINTS Pollen allergen Amb family signature 396 420 IPR018082 -
Tsu08g01857 455 PRINTS Pollen allergen Amb family signature 426 449 IPR018082 -
Tsu08g01857 455 SMART amb_all 173 370 IPR002022 -
Tsu08g01857 455 Pfam Pectate lyase, N terminus 38 86 IPR007524 GO:0030570
Tsu08g01857 455 Gene3D - 98 448 IPR012334 -
Tsu08g01857 455 Pfam Pectate lyase 182 364 IPR002022 -
Tsu08g01857 455 PANTHER PECTATE LYASE 4 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01857 Tsu-Chr8 22880959 22883043 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01857 7 455 Polysaccharide Lyase AT1G14420 56.867 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01857 K01728 - gmx:100798579 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01857 08 22880959 22883043 Tsu08g01857 08 22880959 22883043 ECH