Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01855 ATGGGAGAAGAGAATGAATGGAAGACAGTTAATAGAAGACGATCTGCAAAACAACTCATACCAGACATAGCAACGTCTGGTAGGAATTTCAGGGGGGATCATTCAAGGGAAACGACGTATTTTTTCACCGACATACCGGATAGCTTTGGTGCAAAGGCTATGTTAAATGTTTTCCAAAACTATGGAAATATCATTGAAGTGGTGATTCCGGCTAAGAAGGACAAAAGAGGCAGGCGCTTTGATTTTGCTCGATTTGTTAACGTTAGGGACACTAGAAGCTTTGGGCTGTATCTTGACACAATCATCATAGGGAGAGACAAGATCAGAGTGAACCTTCCAAGGTTTCAAAGAGACAAGGGAGTGCAAcgtgaattacaaaagaatgAGGGGCAAGAGCACACTACTAAATCACAAGATCttcaaaataattcttttagtCATCATCGACATACTAGTGAAGGAGGCGATAAATCCTATGCGTATGCAGTACGTCATGGCAGTTCTAAGAATCAACTAGGGTACTTTAGTGTGAAAGTGACCCCTCTTGGTGCCAATCTGACTCTATTAGAAGGGCAAGAAGACGGCAAAGTTGAGGCACTTATGGAAGACGCTAAAGATTGGCTGGACCAACGGTTTAAAGAAATTCGCCCTTGGAGTGAAAAGGAAATTGATCATGAAAGACTTGTTTGGCTTAAAGTTTATGGTATTCCGGCACATGCTTGGAATGATTCCTTTTTTACTTTGATCTCTAAACCGTGGGGAACTTTTATCAATGCTGACGATGTGACTATCAAGAAATTAACCATGGATGTAGCGCGTCTTATGATACGTACAACTGGCCAAAGGGTGGTTGATGAATTTATTGACGTAAAAGTGAATGACGAGATTTTCCATATACGTGTTATTGAAGATTCATATGGGCCAATGAGGGTCATGGTTTCTCAATCTCATCGCCGAGAAGGAAGAGATGACGATGGGGGCGATTTCAATGCGATCCTGAATGTAGGAGAAAGAAAAGGGAGTAATGGGGGGAGCAGTCAAAGCGAAAGGGTGgatttctctctttttgttgATTTAATGGAGGTCGTAGACGTGCCTTTGACAGGGAAAAAGTTTTCTTGGTTTAGCAATGATGGTACAACGATGAGCCGTTTATATCGCTTTTTGTTGTCAGAAGGTTTCATTGAGAAGGGTGACATCTCAGGTCAATGGATCGGTGACCGGGACATATCGGACCACTGCCCTATTTGGCTTCTTTGTTCAGTCCCGAATTGGGGTCCTAAACCTTTTCGATTCAATAATTGTTGGCTCGAACATTCGGATTTTCTACCTTTTGTGGCTACCGTGTGGGAGAGCATGAATATTAGAGGCATGAAAGCGTTTGTAATCAAAGAGAAATTGAAATTGTTGAAGGAAAGTTTGAAGAAGTGGAATAGAGAGGTATTTGGTATACTCGACCTAAACATTAACGAAACCGTGAAAGACTTGAAGGAGTTCGAAGATAGGATGGCAAATGGAGCAGAAGATGTACATATTTCTCAATCCAAGGATCTTGTCAAAAAGTTTTGGGAGCAACTACATTACAAAGAAAGCCTTCTTAAACAAAAATCTAGGCTTAAATGGATTCAAGAAGGAGATTCGAATACTCGTTTCTTCTATGCGAGTATTAAAGGACGGAGACGTAGAAATCAATTGTCATTCCTTAAGAAGGGGGAGGAGTGGATTCAAGGGGTGGATAACATCAAAACAGAGGTAATGGATCATTTTTCTTTGAACTTTACTGAGGAATGGCAACATAGACCTTTTTTACAGGGGATTGAATTTTCTACACTATCCGAAGAAGATAATGCTTGTTTGATGGAATCCTTTTCGGAAGAAGAAGTCAAAGAGGTAATATGGAGTTGTGACGGTAATAAGAGTCCGGGCCCGGACGGATTCAATCTAAATTTCTTTAAGCACTGTTGGTCTATAGTGAAAACAGACGTGATGGCTTTTTTTACAGAATTTCATGCAAACGCCGTTTTACCTAAAGCTTTGACAGCTTCTTTTCTAGCTCTTGTTCCTAAAAAAGATCATCTGCAAGACCTCTATGAGTACCGGCCAATCTGCTTGATAGGAGTTGTGTTAAATGAGATCATTGATTTAGCCAAGAAGAGGAAGGATAAATGCTTATTATTCAAGCTGGACTTAGATAGAGCTTATGATACCATAAATTGGAGTTTCTTGGAACGCATGATGATTAAAATGGGCTTTGCAGAAGGGTGGTTGAAATGGATGTGTGCTTGTATCTTTCAGAGTTCTATGTCTGTATTAGTTAATGGTAGCCCTACTAAATATTTTGATGTCTCCAAAGGTTTACGACAGGGTGATCCTCTCTCAccctttctatttttaattgtgGCTGAAGGCTTAACAGGTATGGTCAGACGGGCGGTCGAGTTAGGTAAATTTCAGGGGTACAAACTCAGCGACTCTATTCAATTCCAAATTCTTCAATTCGCTGATGACACGATATTGATGGGTGAAAACTCTTGGGATAATTTATGGACTATCAAAACTATGTTACGTGGTTTTGAAATGGTGTCGGgtcttaaaattaattttaccaagAGTAAGTTATATGGCATTAATGTGGATGATAGGTTTTTGGAGGCCGGTTCTACGTTTTTATCATGTCGCTCTGATGTGATACCTTTTAAAGTTCTTGGCATTCCGGTGGGGGCAAATCCAAGGAGAAGAGAGACCTGGAGACCGGTGGTGGAAGCTATGTCTAAAAGATTGAGTAGATGGAGCGGAGGTCATTTATTTTATGGGGGCAGAATAACTTTGATCAACTCGGTATTGGCAAGTTTTCCGCtctattttttctcatttttcaaaGCACCGATCTGCGTCCTTAATCAATTGGTTAGCATTCAACGTAATTTCTTATGGGGAGGAGGTATGGAGGAGAAGAAGTTGTGTTGGGTGAAGTGGGATCATATCTGTTTGCCGAGAGATCTTGGTGGACTAGGtgtgaaaaatttaaaactctTTAATATAGCATTATTAAGCAAATGGAAGTGGCGGTGTGTTAATGACAGCGAGGCGGTTTGGATGGATGTCTTAAGATACAGATGGAAGTGGATACCGGATTCCGTAGGAGTTTTTACGGTAAAATCTTGTTATAATTTGTTGCTACATGTTGGTAACACTGATGTATTTCCTGCGGATTTGCTGGTGGCAATTAAAAAACTTTGGAAGAATGATTTGCCCTCCAAGGTGGGATTTTTTGGTTGGAGATTGTTGTTAGAGAAATTACCGACCCGGGTAGCTTTAGCGCATAGGAATATTTTACCCCCTGACAATGATTTACTTTGTGCTTTTTGTGCCTGTGTGAGGGAAGATTCCAaccatttgtttttcaattgtgTCCATGTGAAACATCTTTGGAAGAAGATTCATGAGTGGATGGGTAAGGCTTATAACAACCAGAATGTTGGTTTCTTACATTTCTTGCAGTTTGGTAATTTGGTGaaattgaaaaagggaatgaaaATCCGTCATCTGATATGGTTAGCAACAACATGGTGTACTTGGAGCATGAGGAACAATATTATTTTCAGAGGTGAAGTAGCCGACTTCCAAGAGAGCGACGAATTTTGGAAGGAAGAACGACCTGAGTTTGATTCATATTGGCAGGAAAGGGCTGTAGAAGCAAAACAATTCAATCAAGCAGCTTATTTCCCTGATCCTTATGCAGTCTCTGGAAACCTAACTGCTTCTATTACTGAaaTTATCGCTGGAAAGAGCGCAAGAAGGAACTTGAGGGGAAACAAAGGGGGAGGGCAATGTCTGGCCACAAACCCAATTGATAGATGCTGGAGGTGTGACCCAAATTGGGCTGATAACCGCCAAAAGTTAGCCGATTGTGTCCAAGGATTCGGCAGAAACACCCGTGGAGGTAAAGGCGGTCCAATGTACGTTGTGACCGATCCTTCTGACGACGAATTGATGGAACCCAAACCCGGCACTCTCCGTCATGCTGTCACACGTAATGGACCCCTTTGGATCATATTCGCTCGCAGCATGCTCATCACATTACAACAAGAACTTATCATGAATAGTGATAAGACCATTGATGGTAGAGGAGTTGAAGTTTTCATTGCCAATGGTGCTGGTATTACCATTCAATTTATTAAGAATATTATCATCCATGGAATTAAGATTTATGACATTCAAGTACGCGAAGGTGGTACTATTAGAGATTCTGAGACCCATTATGGTTTAAGGACTAGGAGTGATGGTGATGGCATTTCCATATTTGGTTCTAGCAATATTTGGATTGATCATGTTTCCATGAAAAATTGTACCGATGGTTTGATTGATGCAATCATGGGATCTACTGCTATTACCATTTCCAATGGTCACTTCACTGACCACAATGAgGTGATGCTTTTTGGTGCTAGTCCAGGTCATAAAATGGACAAGATCATGCAAATCACATTAGCATTCAACCACTTTGGAAAGAGATTAGTACAAAGGATGCCAAGGGCAAGATTTGGTTTTGTCCATTGTGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCCAGAACCCTACACTTATTAGTGAGGGTAACAGATTCATTGGCCCAGAAAACAAAATGGTTGGTAAAGACCTTATTAATTCTAAAGAAGTAACAAAGAGAGAATACACCGAGGAAAGTGAATGGAAAAACTGGCAATGGAGATCAATCAACGATGAATTTTTGAACGGTGCTTTCTTTATTCAATCTGGACCAGAGCTAAAGGATAGACCATTTTCAACGAAAGACATGATAACAGCTAAACCAGGAAGTTATGTTGGAAGACTTACACGATTTGCCGGAAACCTACATTGCACTGTGGGTAAACCTTGTTAG 4917 0.3958 MGEENEWKTVNRRRSAKQLIPDIATSGRNFRGDHSRETTYFFTDIPDSFGAKAMLNVFQNYGNIIEVVIPAKKDKRGRRFDFARFVNVRDTRSFGLYLDTIIIGRDKIRVNLPRFQRDKGVQRELQKNEGQEHTTKSQDLQNNSFSHHRHTSEGGDKSYAYAVRHGSSKNQLGYFSVKVTPLGANLTLLEGQEDGKVEALMEDAKDWLDQRFKEIRPWSEKEIDHERLVWLKVYGIPAHAWNDSFFTLISKPWGTFINADDVTIKKLTMDVARLMIRTTGQRVVDEFIDVKVNDEIFHIRVIEDSYGPMRVMVSQSHRREGRDDDGGDFNAILNVGERKGSNGGSSQSERVDFSLFVDLMEVVDVPLTGKKFSWFSNDGTTMSRLYRFLLSEGFIEKGDISGQWIGDRDISDHCPIWLLCSVPNWGPKPFRFNNCWLEHSDFLPFVATVWESMNIRGMKAFVIKEKLKLLKESLKKWNREVFGILDLNINETVKDLKEFEDRMANGAEDVHISQSKDLVKKFWEQLHYKESLLKQKSRLKWIQEGDSNTRFFYASIKGRRRRNQLSFLKKGEEWIQGVDNIKTEVMDHFSLNFTEEWQHRPFLQGIEFSTLSEEDNACLMESFSEEEVKEVIWSCDGNKSPGPDGFNLNFFKHCWSIVKTDVMAFFTEFHANAVLPKALTASFLALVPKKDHLQDLYEYRPICLIGVVLNEIIDLAKKRKDKCLLFKLDLDRAYDTINWSFLERMMIKMGFAEGWLKWMCACIFQSSMSVLVNGSPTKYFDVSKGLRQGDPLSPFLFLIVAEGLTGMVRRAVELGKFQGYKLSDSIQFQILQFADDTILMGENSWDNLWTIKTMLRGFEMVSGLKINFTKSKLYGINVDDRFLEAGSTFLSCRSDVIPFKVLGIPVGANPRRRETWRPVVEAMSKRLSRWSGGHLFYGGRITLINSVLASFPLYFFSFFKAPICVLNQLVSIQRNFLWGGGMEEKKLCWVKWDHICLPRDLGGLGVKNLKLFNIALLSKWKWRCVNDSEAVWMDVLRYRWKWIPDSVGVFTVKSCYNLLLHVGNTDVFPADLLVAIKKLWKNDLPSKVGFFGWRLLLEKLPTRVALAHRNILPPDNDLLCAFCACVREDSNHLFFNCVHVKHLWKKIHEWMGKAYNNQNVGFLHFLQFGNLVKLKKGMKIRHLIWLATTWCTWSMRNNIIFRGEVADFQESDEFWKEERPEFDSYWQERAVEAKQFNQAAYFPDPYAVSGNLTASITEIIAGKSARRNLRGNKGGGQCLATNPIDRCWRCDPNWADNRQKLADCVQGFGRNTRGGKGGPMYVVTDPSDDELMEPKPGTLRHAVTRNGPLWIIFARSMLITLQQELIMNSDKTIDGRGVEVFIANGAGITIQFIKNIIIHGIKIYDIQVREGGTIRDSETHYGLRTRSDGDGISIFGSSNIWIDHVSMKNCTDGLIDAIMGSTAITISNGHFTDHNEVMLFGASPGHKMDKIMQITLAFNHFGKRLVQRMPRARFGFVHCVNNDYTHWEMYAIGGSQNPTLISEGNRFIGPENKMVGKDLINSKEVTKREYTEESEWKNWQWRSINDEFLNGAFFIQSGPELKDRPFSTKDMITAKPGSYVGRLTRFAGNLHCTVGKPC 1638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01855 1638 MobiDBLite consensus disorder prediction 119 154 - -
Tsu08g01855 1638 Gene3D - 1281 1631 IPR012334 -
Tsu08g01855 1638 Gene3D - 30 144 IPR012677 -
Tsu08g01855 1638 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 668 889 IPR000477 -
Tsu08g01855 1638 PANTHER PECTATE LYASE 18-RELATED 1206 1638 IPR045032 GO:0030570
Tsu08g01855 1638 SUPERFAMILY DNA/RNA polymerases 627 874 IPR043502 -
Tsu08g01855 1638 Pfam zinc-binding in reverse transcriptase 1050 1144 IPR026960 -
Tsu08g01855 1638 PRINTS Pollen allergen Amb family signature 1530 1549 IPR018082 -
Tsu08g01855 1638 PRINTS Pollen allergen Amb family signature 1508 1527 IPR018082 -
Tsu08g01855 1638 PRINTS Pollen allergen Amb family signature 1579 1603 IPR018082 -
Tsu08g01855 1638 PRINTS Pollen allergen Amb family signature 1609 1632 IPR018082 -
Tsu08g01855 1638 PRINTS Pollen allergen Amb family signature 1428 1449 IPR018082 -
Tsu08g01855 1638 PRINTS Pollen allergen Amb family signature 1364 1380 IPR018082 -
Tsu08g01855 1638 PRINTS Pollen allergen Amb family signature 1304 1321 IPR018082 -
Tsu08g01855 1638 PRINTS Pollen allergen Amb family signature 1328 1353 IPR018082 -
Tsu08g01855 1638 CDD RRM_SF 41 111 - -
Tsu08g01855 1638 Pfam Domain of unknown function (DUF4283) 176 276 IPR025558 -
Tsu08g01855 1638 Pfam Pectate lyase, N terminus 1221 1269 IPR007524 GO:0030570
Tsu08g01855 1638 Gene3D Endonuclease/exonuclease/phosphatase 326 419 IPR036691 -
Tsu08g01855 1638 SUPERFAMILY DNase I-like 326 418 IPR036691 -
Tsu08g01855 1638 Pfam Pectate lyase 1366 1547 IPR002022 -
Tsu08g01855 1638 PANTHER PECTATE LYASE 1206 1638 - -
Tsu08g01855 1638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 115 IPR000504 GO:0003723
Tsu08g01855 1638 SUPERFAMILY RNA-binding domain, RBD 28 114 IPR035979 GO:0003676
Tsu08g01855 1638 MobiDBLite consensus disorder prediction 119 134 - -
Tsu08g01855 1638 SMART amb_all 1356 1553 IPR002022 -
Tsu08g01855 1638 SUPERFAMILY Pectin lyase-like 1282 1628 IPR011050 -
Tsu08g01855 1638 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 690 905 IPR000477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01855 Tsu-Chr8 22756405 22767179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01855 1222 1638 Polysaccharide Lyase AT1G14420 58.430 1.07e-170 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01855 K01728 - gmx:100798579 667.537