Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01850 ATGGGGTTAGGTGGTGTGAATGGTAAAGTGATAGAGTCTTTGGATGTGTGTAAATCAAAagggaagaagaaaaagaagttaCAAGATGGGGCAatggaagatgaagaaaatgaagctGGTTGTTGGCATAGTTTTAGGTTCATTGGTAACTGCATTTCTTCAAGATCCAAGGTTGATAGTTCTGTTAGTGGCACCAGTGCTAATTATGCTGAAAGCAAATCAACTATTGATACAAGTAGAGACCAGCCATCAGTTCCAGTAGTCTCTTCGAcgactactactactactagtaaTGCTGAAAGCAACTCATCTACTTCAAAACTTGAAGAAGAGCTAAAAATTGCTTCCAGGCTGCGAAAGTTCTCTTTCAATGATCTTAAGTTGGCAACAAGAAATTTTCGGCCCGAGAGTCTTCTTGGTGAAGGTGGGTTTGGTTGTGTGTTCAAAGGATGGATTGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGACTTACTGTTGCTGTCAAAACCCTAAATCATGATGGGCTCCAGGGTCATAAAGAATGGCTGGCTGAAGTAAATTATCTTGGTGATTTAGTTCATCAAAACCTTGTCAAACTTATAGGCTACTGTATTGAAGATGATCAAAGGTTGCTGGTATATGAATTTATGCCTCGAGGAAGCTTGGAAAACCACTTGTTTAGGAGATCCTTGCCACTTCCATGGTCCATAAGGATGAAAATTGCGCTAGGAGCTGCAAAGGGACTTGCTTTTCTTCACGAGGAAGCTGAACGACCTGTAATATATAGGGATTTCAAAACTTCCAATATACTATTGGATGCAGAGTACAATGCCAAGCTCTCAGACTTTGGACTTGCAAAAGATGGTCCAGAGGGTGATAAAACTCACGTGTCTACCCGAGTTATGGGAACTTATGGTTACGCAGCACCAGAATATGTCATGACAGGGCATCTTACATCAAGAAGTGATGTGTATAGTTTTGGAGTGGTACTACTTGAGATGATAACTGGGCGAAGATCCATGGATAAAAACCGGCCAAATGGCGAACATAACCTTGTAGAATGGGCTAGACCGCATCTAGGAGAGAGAAGAAGGTTCTACAGGTTGATAGACCCTCGATTGGAAGGCCACTTCTCGATAAAAGGAGCTCAGAAAGCTGCCCAGTTGGCTGCTCACTGCCTTAGCCGAGATCCAAAAGCAAGACCACTAATGAGTGAAGTCGTAGAAGCTTTGAAGCCTCTACCAAACCTAAAGGACATGGCTAGTTCATCATACTATTTCCAGACGATGCAAGCTGACCGATTTAGTGCAAGTCCAAATACTCGTGCAAGTCCAAATACTCGGAATGGTAGAACACAAGGAGGATCCGCCCGAAATGGACAACAACAAAGGAGCCTTTCCATATCACATGGGGCTCATGCTTCTCCATTTCGCCATCGGTATCCTCAACTTTCACCAAAGCCAATTGGAAAAGCGCAGAGTTGA 1491 0.4145 MGLGGVNGKVIESLDVCKSKGKKKKKLQDGAMEDEENEAGCWHSFRFIGNCISSRSKVDSSVSGTSANYAESKSTIDTSRDQPSVPVVSSTTTTTTSNAESNSSTSKLEEELKIASRLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNYLGDLVHQNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMITGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAQLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRFSASPNTRASPNTRNGRTQGGSARNGQQQRSLSISHGAHASPFRHRYPQLSPKPIGKAQS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01850 496 Gene3D Transferase(Phosphotransferase) domain 1 219 435 - -
Tsu08g01850 496 Pfam Protein tyrosine and serine/threonine kinase 137 413 IPR001245 GO:0004672|GO:0006468
Tsu08g01850 496 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 69 484 - -
Tsu08g01850 496 MobiDBLite consensus disorder prediction 438 496 - -
Tsu08g01850 496 MobiDBLite consensus disorder prediction 69 105 - -
Tsu08g01850 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Tsu08g01850 496 ProSiteProfiles Protein kinase domain profile. 133 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01850 496 Gene3D Phosphorylase Kinase; domain 1 107 218 - -
Tsu08g01850 496 ProSitePatterns Protein kinases ATP-binding region signature. 139 171 IPR017441 GO:0005524
Tsu08g01850 496 PANTHER OS01G0588500 PROTEIN-RELATED 69 484 - -
Tsu08g01850 496 MobiDBLite consensus disorder prediction 69 106 - -
Tsu08g01850 496 MobiDBLite consensus disorder prediction 438 472 - -
Tsu08g01850 496 CDD STKc_IRAK 139 416 - -
Tsu08g01850 496 SUPERFAMILY Protein kinase-like (PK-like) 119 440 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01850 Tsu-Chr8 22677242 22681306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01850 96 413 Glycoside Hydrolase AT3G07070 56.698 8.64e-119 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu08g01850 PK_Tyr_Ser-Thr 8.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01850 - - gmx:100787127 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01850 08 22677242 22681306 Tsu08g01850 08 22677242 22681306 ECH