Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01830 ATGGAAATTGATGGATCTAAAGAAATCTTTCTTGGTCAAGTTGTGAATAATAAGGATGAGGCATACAACTTGTATCAAGAACATGCTTTCAAAATGGGTTTTAGTGTACGTAAGGGGAGGGAGTTATATTATGATAATGAGAAGAAACAAACACGCTTAAAAGAATTTTATTGTTCTAAACAAGGGTTTAAGAACAACAAACTCGAAGGTGAAGTCGCTTATGAGAGAGCAGATTCAAGAACAAATTGTAATGCTATGGTGCGATTTAATGTGAGCAAGGAAGGTCTATATAAAATAACCCAGTTGGTATTGGATCACAATCATGAGTTTGTACCTCCTGAGCAAAGACATATGCTACGTTCTATGAGAAATTTGTCAAATGTCAAAGGTGGTCTCATAAAGTCCATGGTGAATGCTGGTATGAAAGTTACAAATATTTGGAGTTATCTTGGTGAAGAAGTTGGAGGATTTAATAATCTTGGTATAACTTTGAAAGATATGCACAATTATGTCTACACAGAAAAGTTGAAGTCAATTGAAGCCGGTGATGCTCAAGCTTTAGTTAACCATTTACAAAATAGGCAAGCACAAGATGTCATGTTCTACTATAGTGTGCAGTTAGATCAGGAATCACGTTTGACCAATGTCTTTTGGAGAGATGATAGGTTTCTTCTAGGAATTAAAAGTTGCATTTCTTCTGAAAACACTACCAACCCCAAGAAAAAACCTGGAGGATGGATGGCCATGCCTTATATTTTagGGAATGAAACCTTTGAAAGATTAGCAATATTTGGGTTGTTTGCTAATTTTATGGTGTATTTAACAAGAGAGCTTCACTTGGATCAAGTTTATGCTTCTAACATACTCTACATATGGGGTGGGATCACAAACTTTGCTCCCCTAGTTGGTGCCTTCATTTCTGATGCTTATGTGGGACGTTTTTGGACTATAGCTTTTGCTTCTTTTGCTTCTCTTCTGGGGATGATTGTGGTGACTTTAACATCATGGTTACCAAATTTGCACCCTCCACCTTGTACTCCACATCAACTAGTAATGGGTGAATGTATCAAAGCAAACAATTCTCAAATAGGTGTGCTATTTTTGGGACTTGGTTTCTTAACAATTGGTGCTGCTGGAGTAAGACCATGTAGTATACCTTTTAGTGTTGACCAATTTGATCAAACAACAATTGAAGGAAAGAAAGGGATCAATAGTTTCTTTAATTGGTATTACACAACATTAACATTGGTAATGTTAGTCACTCAAACATTGGTGGTCTATATACAAGATTCAGTGAGTTGGAAGTTAGGTTTTGGGATACCTGTTGTATGCATGTTTTGTTCCATAATTATGTTCTTTATTGGAACAAAGACATATGTCTATGTGAAAGCTGAAGGAAGCATTTTTTCTGGAATATTTCAAGTTTTAGTGGCTGCCTATAAAAAGAGAAATGTCAAGCTTCCAAGTGAGGACAATTCAAATGGAGTTTTCTATGATCCTCCATTGGTTGGGACTAATATTTCATCAAAGCTCTCTTTAACTCATCAATTCAGGGCCTTGAACAAAGCAGCTTTAATAATGGGGGGTGAATTAAGTTCAAATGGGAGCATAGTAAACAAGTGGAAACTCACTAGCATTCAACAAGTAGAAGAGGTTAAATGTTTAGCAAGAATTTTTCCAATATGGGCAACTGGGATTCTTAGTCTCACTTCCATGGCACAACAAGGAACATTCACTATATTACAAGCCTTAAAAATGGATAGACACTTAGGACACAAATTCCAAATCCCAGCTGGTTCAATTGGAGTCATATCATTACTCACCATAGCTTTAACTCTTCCATTATATGATAGAATCTTAGTTCCATCATTAAGAAAAATGACTAATCATGAAGGTGGCATTACACTACTTCAAAGAATTGGAATTGGCatgtttttctctattttttcaatGATTGTTGCTGGCTTTGTTGAGAAAATTAGAAGAGATTCAGCAAATTCTAACTCAAGTCTACTTGGAATTGCTCCTTTGTCAGTCTTTTGGCTAGCCCCTCAATTGATCCTTATGGGACTTTGTGAATCCTTCAATATATTAGGACAAATTGAATTCTTTAATAGACAATTTCCTGATCATATGAGAAGCATTGGTAATGCATTATTCTCATGTTCTGTTGCTATAGCTAGTTATGTGAGTAGCATTATAGTGAATGTAATTCATCATACTACAAGAACACATGATCATCCTGATTGTTTCGATTTCGATTTAAAGCCAAAGGATGTGACGGTTCAATTGAAGACAACGTTTCAAATACAAGGACACGCGTCAAGAGACTGA 2334 0.356 MEIDGSKEIFLGQVVNNKDEAYNLYQEHAFKMGFSVRKGRELYYDNEKKQTRLKEFYCSKQGFKNNKLEGEVAYERADSRTNCNAMVRFNVSKEGLYKITQLVLDHNHEFVPPEQRHMLRSMRNLSNVKGGLIKSMVNAGMKVTNIWSYLGEEVGGFNNLGITLKDMHNYVYTEKLKSIEAGDAQALVNHLQNRQAQDVMFYYSVQLDQESRLTNVFWRDDRFLLGIKSCISSENTTNPKKKPGGWMAMPYILGNETFERLAIFGLFANFMVYLTRELHLDQVYASNILYIWGGITNFAPLVGAFISDAYVGRFWTIAFASFASLLGMIVVTLTSWLPNLHPPPCTPHQLVMGECIKANNSQIGVLFLGLGFLTIGAAGVRPCSIPFSVDQFDQTTIEGKKGINSFFNWYYTTLTLVMLVTQTLVVYIQDSVSWKLGFGIPVVCMFCSIIMFFIGTKTYVYVKAEGSIFSGIFQVLVAAYKKRNVKLPSEDNSNGVFYDPPLVGTNISSKLSLTHQFRALNKAALIMGGELSSNGSIVNKWKLTSIQQVEEVKCLARIFPIWATGILSLTSMAQQGTFTILQALKMDRHLGHKFQIPAGSIGVISLLTIALTLPLYDRILVPSLRKMTNHEGGITLLQRIGIGMFFSIFSMIVAGFVEKIRRDSANSNSSLLGIAPLSVFWLAPQLILMGLCESFNILGQIEFFNRQFPDHMRSIGNALFSCSVAIASYVSSIIVNVIHHTTRTHDHPDCFDFDLKPKDVTVQLKTTFQIQGHASRD 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01830 777 PANTHER PEPTIDE/NITRATE TRANSPORTER 232 748 - -
Tsu08g01830 777 Pfam POT family 314 742 IPR000109 GO:0016020|GO:0022857|GO:0055085
Tsu08g01830 777 Pfam FAR1 DNA-binding domain 24 112 IPR004330 -
Tsu08g01830 777 Gene3D MFS general substrate transporter like domains 226 758 IPR036259 -
Tsu08g01830 777 SUPERFAMILY MFS general substrate transporter 262 742 IPR036259 -
Tsu08g01830 777 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 232 748 IPR000109 GO:0016020|GO:0022857|GO:0055085
Tsu08g01830 777 CDD MFS_NPF1_2 249 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01830 Tsu-Chr8 22372529 22384693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01830 240 755 Organic Solute Cotransporters AT1G69870 60.465 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu08g01830 PTR2 2e-78 CL0015
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01830 - - gmx:100776472 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01830 08 22372529 22384693 Tsu08g01830 08 22372529 22384693 ECH