Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01828 ATGAAGAACAGGTTGTCAGGACCCATACCTCAAACAATTTTCAATCTATCTTCACTTGAAGAAATGGGTTTAGCTTATAACAACTTATCAGgCAGTCTTCCGTCAAATATTTGTCAAGGTCTGCCAAATCTTAGATATCTTTATCTTGATTATAATGCTTTTTCTAGTTACATGCCGAGAGTTTGGCATCAATGTGAAGAGTTGGAAGAATTAGATCTATCATACAATAGTTTCAACAGAGGACTCATACCAAGTGCCATCCAAAACATGACCAAACTTCGTGTTTTATATCTTGAAGGAACCAACTTGGAGGgtTTGATACCAGAGGAGATTGGCTATCTTGATAAACTTGAGTCTCTAATGTTGGCAAACAATACACTTGGTGGATCTATTCCCTCCAAAATCTTCAATATGTCATCACTAAAACAATTGCAACTTCAACAAAATAAACTCTCAGGCATAATTCCTTCAAATATGAGATATAACCTTCCAAACCTGGAACaagtatttttgtttgaaaacaattttgttggaaatattccaaataatttattcaattcaTCTAACCTATATACAATTGGATTGGAGAACAATGCATTCAGTGGAATTGTTCCCAATGCTATTGGAAATTTAAGGTCCCtagaaattattttcttaaatgacAACAATTTGACAATAAATCATTCATTCTTTACTTCCTTGGCAAGTTGCAGATATTTGGAATATCTAGACCTATcaacaaatcatatattatcAAATCTTCCTAAGTCAATAGGAAACATAAGTTCAACAAACTTTAGGGCAGTTTCATGTGGGATTGAGGGTAATATTCCGTTAGAAGTTGGAAACATGAGCAAATTGCTATATTTTTCTGTAAATGATAATAATGTAAATGGACTAATACCCGGTACATTCAAAGGATTACAAAAACTTCAGCTATTGGACCTTAGTAACAATGGACTGCAAGGGTCATTTATCGAGGAGCTTTGTGAAATTGAGAGTTTGAGTGAGTTGTATCTAAACAATAATAAACTCTATGGTGTTTTACCAACATGCTTCAGAAATATGACTTTTCTTAGATATTTACACATAGGATTTAATAGTTTCAACTCTAGGATACCTTCCTCTCTTTGGAGTCTCAAAGATATCTTAGAGGTAAATTTGATTTCGAATGCTTTCATTGGCAATATTCCACCAGAGGCTGGGAATTTGAGAGCAATTGTACTATTAGATCTATCAAGAAATCATATTTCAAGCAATATTCCTACAACAATCAGTTCCTTAAATACTTTGCAGAATCTCTCATTAGCACAAAATAACCTCAATGGATCAATTCCTGCATCACTTGGTGACATGGTAAGCTTGATCTCCTTGGACTTATCCCAAAATATGCTAACTGGTGTTATTCCAAAATCCTTAGAATCACTTAAGCAAATTCAAAACATCAACTTCTCATATAATAGATTACAAGGAGAAATTCCTAATGGTGGACCATTCAAAAATTTCACAGCTCAATCATTTATGCATAATGAAGCACTTTGTGGAAATCCTCGTCTCCAGGTACCTCAATGTAGTAAACAAGTTAAGAAAAGGTCAATTTCAAAGAAGCTGTTACTCAAATGCTTAATTCCTATAGTTGTGTCAACCAATTTGGTTGTTGCATGCATAATACTCCTAAAacataataaaaggaaaaatgttgaaaatacTCTTGAAAGGGGTTTATCAACTTTAGGAGCTCCAAGAAGAATATCCTATTATGAACTTGTGCAAGCAACTAATGGATTCAATGAGAGTAACTTACTTGGAAAGGGGGGATTTGGCTCTGTGTATCAAGGGAAACTTCCTGATGGTGAGATTATTGCAGTTAAAGTAATTGAATTGCAATCAGATGTAAAATCAAAAAGTTTTTATACAGAATGCAATGCAATGAAAATTCTTCGACATCGGAATTTGGTTAAGATTATCAGTGGTTGTTCGAATCTTGATTTCAAAGCACTGGTGATGGAGTTCATGACAAATGGAAGTGTGGACAAATGGTTATATTCACATAACTATTGTTTAAATTTCTTACAAAGATTAAATATAATGATAGATGTTGCATCTGCATTGGAATATCTCCATCATGGTTCTTCAATACCTGTGGTTCATTGTGATCTAAAGCCTTCCAATGTGTTGTTGGATGAAAATATGGTTGCACATGTTAGTGATTTTGGTATTTCCAAGTTGGTGGATGAAGGACAATCTAAAACACATACAGAGACTTTGGCTACTATTGGATACCTTGCACCAGAGTATGGATCTAGTGGAATTGTTTCTGTCAAAGGAGATGTGTACAGCTATGGGATTATGCTAATGGAAATCTTCACAGGAAAAAAACCAACAGATGACATGTTTGTTGCAGAGCTAAGTTTGATAACATGGATCGGTGGATCATTGCCTAATTTAATTATGGAGGTCCTGGATTCTAATTTAGTCCAACAGAATGGGGAACAAATTGATGACCTATTAACTTACATGTCATCTATATTTGGTTTAGCCATGAATTGTTGCAAAGATTCACCTGAAGCAAGAATGAATATGGTAGATGTTACTGCATCGCTAATCAAAATAAAGACTTCGGTTCTTGGCGCAAATAGGGTCTAG 2646 0.333 MKNRLSGPIPQTIFNLSSLEEMGLAYNNLSGSLPSNICQGLPNLRYLYLDYNAFSSYMPRVWHQCEELEELDLSYNSFNRGLIPSAIQNMTKLRVLYLEGTNLEGLIPEEIGYLDKLESLMLANNTLGGSIPSKIFNMSSLKQLQLQQNKLSGIIPSNMRYNLPNLEQVFLFENNFVGNIPNNLFNSSNLYTIGLENNAFSGIVPNAIGNLRSLEIIFLNDNNLTINHSFFTSLASCRYLEYLDLSTNHILSNLPKSIGNISSTNFRAVSCGIEGNIPLEVGNMSKLLYFSVNDNNVNGLIPGTFKGLQKLQLLDLSNNGLQGSFIEELCEIESLSELYLNNNKLYGVLPTCFRNMTFLRYLHIGFNSFNSRIPSSLWSLKDILEVNLISNAFIGNIPPEAGNLRAIVLLDLSRNHISSNIPTTISSLNTLQNLSLAQNNLNGSIPASLGDMVSLISLDLSQNMLTGVIPKSLESLKQIQNINFSYNRLQGEIPNGGPFKNFTAQSFMHNEALCGNPRLQVPQCSKQVKKRSISKKLLLKCLIPIVVSTNLVVACIILLKHNKRKNVENTLERGLSTLGAPRRISYYELVQATNGFNESNLLGKGGFGSVYQGKLPDGEIIAVKVIELQSDVKSKSFYTECNAMKILRHRNLVKIISGCSNLDFKALVMEFMTNGSVDKWLYSHNYCLNFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDENMVAHVSDFGISKLVDEGQSKTHTETLATIGYLAPEYGSSGIVSVKGDVYSYGIMLMEIFTGKKPTDDMFVAELSLITWIGGSLPNLIMEVLDSNLVQQNGEQIDDLLTYMSSIFGLAMNCCKDSPEARMNMVDVTASLIKIKTSVLGANRV 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01828 881 SUPERFAMILY L domain-like 9 322 - -
Tsu08g01828 881 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 66 876 - -
Tsu08g01828 881 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 2 79 - -
Tsu08g01828 881 Gene3D Phosphorylase Kinase; domain 1 579 671 - -
Tsu08g01828 881 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 66 876 - -
Tsu08g01828 881 SUPERFAMILY Protein kinase-like (PK-like) 577 868 IPR011009 -
Tsu08g01828 881 Pfam Leucine rich repeat 430 489 IPR001611 GO:0005515
Tsu08g01828 881 Pfam Leucine rich repeat 3 53 IPR001611 GO:0005515
Tsu08g01828 881 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 79 - -
Tsu08g01828 881 SMART LRR_typ_2 452 475 IPR003591 -
Tsu08g01828 881 SMART LRR_typ_2 356 380 IPR003591 -
Tsu08g01828 881 SMART LRR_typ_2 16 40 IPR003591 -
Tsu08g01828 881 SMART LRR_typ_2 163 187 IPR003591 -
Tsu08g01828 881 SMART LRR_typ_2 332 355 IPR003591 -
Tsu08g01828 881 SMART LRR_typ_2 41 64 IPR003591 -
Tsu08g01828 881 SMART LRR_typ_2 284 307 IPR003591 -
Tsu08g01828 881 SMART LRR_typ_2 404 428 IPR003591 -
Tsu08g01828 881 SMART LRR_typ_2 211 233 IPR003591 -
Tsu08g01828 881 SMART LRR_typ_2 114 138 IPR003591 -
Tsu08g01828 881 Gene3D Transferase(Phosphotransferase) domain 1 672 877 - -
Tsu08g01828 881 Pfam Leucine Rich Repeat 68 89 IPR001611 GO:0005515
Tsu08g01828 881 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524
Tsu08g01828 881 ProSiteProfiles Protein kinase domain profile. 596 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01828 881 Gene3D Ribonuclease Inhibitor 229 532 IPR032675 -
Tsu08g01828 881 Gene3D Ribonuclease Inhibitor 1 228 IPR032675 -
Tsu08g01828 881 Pfam Protein tyrosine and serine/threonine kinase 600 866 IPR001245 GO:0004672|GO:0006468
Tsu08g01828 881 SUPERFAMILY L domain-like 270 517 - -
Tsu08g01828 881 ProSitePatterns Serine/Threonine protein kinases active-site signature. 715 727 IPR008271 GO:0004672|GO:0006468
Tsu08g01828 881 SMART serkin_6 596 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01828 Tsu-Chr8 22350517 22359505 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01828 4 881 Receptor kinase-like Gene Family AT3G47570 34.973 7.47e-164 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu08g01828 PK_Tyr_Ser-Thr 9.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01828 - K13420 mtr:MTR_8g465340 1216.06