LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g01826	CTTCAAATATTAAGCATATTTAACAATGATTTGACTATAGATGATTCTATTCAATTCTTTACTTCCTTGTCAAATTGTAGATATTTGCAATATCTAGACATATCAAGAAATCATATACTTTTCAATTCCAATCTTCCTAAATCTATTGGAAACATATCTATACAATCCTTTAGGGCAGATTCATGTGGAATTCAGGGTAATATTCCGGTAGAAGTTGGAAACATTAGCAACTTGCTATATTTTAATCTAAATGGGAATAATATAAATGGACCAATACCTACTACATTCAAAGGATTAAAGAAACTTCAGGGATTGTACCTTAGCAACAATGGACTAGAAGGATCATTTATTGAGGAGCTTTGTGAAATTGAGAGGTTGAGTGAgttgtatctagacaataataagCTTTCTGGAATTTTACCAACATGTTTGGGAAATCTGGCTTTTCTTAGAACATTGGACATAGGATCAAACAGTTTTAACTCTAACATACCTTCCTCACTTTGGAATCTCAGAGATATCTTAAAGCTAAATCTGTCCTCCAATGGTTTCATTGGTAATCTTTCACCTGAGATTGGGaatttgaaagcaattatatTGTTAGatatatcaaaaaataatattttagggAACATTCCTACAACTGTCACTTCCTTAATAAATTTGGAGGTTCTCTCTTTATCACATAACAAATTGTATGGGTCAATTCCCACATCACTTGGTGATATGGTAGGCTTGATCTCCTTGGATTTGTCCCAAAATATACTGACAGGTGTTATTCCAAAATCCTTAGAATCACTTCGGGATCTTCAAAATATCAACTTCTCATATAATAGATTGCAAGGAGAGATTCCTGATGGtggaaatttcaaaaatttcacgGCTCAATCTTTTATGCATAATGAAGCACTTTGTGGTAATCCTCGCCTAAACGTACCTCTGTGTGATAATCAATTTaagaaaagttcaaaaaaaaagttgttactCAAATGCATAATTCCCATAGTTGTGTCATCCATTTTGATTGTTGCAGCCATCATAATTTTGAAAGTTAAGAAAGGGAAAAAGGCTGAAAATACTGTTGAAAGGGGTTTATCAACTTTAGGAGCTCCAAGAAGAATATCCTATTATGAACTTGTGCAAGCAACTAATGGATTCAATGAGAGTAACTTACTTGGAAAGGGGGGATTTGGCTCTGTGTATCAGGGGAAACTTCCAGATGGAGAGATGATTGCAGTTAAAGTAATTGATTTGCAATCAGATGTAAAATCAAAAAGCTTTGATACAGAATGCAATGCAATGAGAAATCTTAGACATCGGAATTTGGTTAAGATTATCAGTGGTTGTTCGAGTCTTGATTTCAAAGCATTGGTGATGGACTTCATGTCAAATGGAAGTTTGGATAAATGCTTATATTCACATAAGTATTGTTTAAATTTCTTACAAAGGTTAAATATAATGATAGATATTGCATCTGCATTGGAATATCTTCATCATGGTTCTTCAATACCTGTGGTTCATTGTGATCTAAAGCCTTCCAATGTGTTGTTGGATGAAAATATGGTTGCACATGTTAGTGATTTTGGTATTTCCAAGTTGATGGATGAAGGACAATCTAAAACACATACAGAGACTTTGGCTACTATTGGATACCTTGCACCAGAGTATGGATCTAGTGGAATTGTTTCTGTCAAAGGAGATGTGTACAGCTATGGGATTATGCTAATGGAAATCTTCACAGGAAAAAAACCAACAGATGACATGTTTGTTGCAGAGCTAAGTTTGATAACATGGATCGGTGGATCATTGCCTAATTCAATTATGGAGGTCCTGGATTCTAATTTAGTCCAACAGAATGGGGAACAAATTGATGACCTATTAACTTACATGTCATCTATTTTTGGTTTAGCCATGAATTGTTGCGAAGATTCACCTGAAGCAAGAATGAATATGGCAGATGTTACTGCGTCGCTAACCAAAATCAAGACTAAGTTCTTGGCGCAAATAGGGTCTAGTTAA	2019	0.3309	LQILSIFNNDLTIDDSIQFFTSLSNCRYLQYLDISRNHILFNSNLPKSIGNISIQSFRADSCGIQGNIPVEVGNISNLLYFNLNGNNINGPIPTTFKGLKKLQGLYLSNNGLEGSFIEELCEIERLSELYLDNNKLSGILPTCLGNLAFLRTLDIGSNSFNSNIPSSLWNLRDILKLNLSSNGFIGNLSPEIGNLKAIILLDISKNNILGNIPTTVTSLINLEVLSLSHNKLYGSIPTSLGDMVGLISLDLSQNILTGVIPKSLESLRDLQNINFSYNRLQGEIPDGGNFKNFTAQSFMHNEALCGNPRLNVPLCDNQFKKSSKKKLLLKCIIPIVVSSILIVAAIIILKVKKGKKAENTVERGLSTLGAPRRISYYELVQATNGFNESNLLGKGGFGSVYQGKLPDGEMIAVKVIDLQSDVKSKSFDTECNAMRNLRHRNLVKIISGCSSLDFKALVMDFMSNGSLDKCLYSHKYCLNFLQRLNIMIDIASALEYLHHGSSIPVVHCDLKPSNVLLDENMVAHVSDFGISKLMDEGQSKTHTETLATIGYLAPEYGSSGIVSVKGDVYSYGIMLMEIFTGKKPTDDMFVAELSLITWIGGSLPNSIMEVLDSNLVQQNGEQIDDLLTYMSSIFGLAMNCCEDSPEARMNMADVTASLTKIKTKFLAQIGSS	672

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g01826	672	SUPERFAMILY	Protein kinase-like (PK-like)	367	658	IPR011009	-
	Tsu08g01826	672	Gene3D	Phosphorylase Kinase; domain 1	369	461	-	-
	Tsu08g01826	672	SMART	serkin_6	386	666	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu08g01826	672	Pfam	Leucine rich repeat	74	112	IPR001611	GO:0005515
	Tsu08g01826	672	Pfam	Leucine rich repeat	221	280	IPR001611	GO:0005515
	Tsu08g01826	672	Pfam	Leucine rich repeat	125	183	IPR001611	GO:0005515
	Tsu08g01826	672	Gene3D	Ribonuclease Inhibitor	1	324	IPR032675	-
	Tsu08g01826	672	SMART	LRR_typ_2	123	146	IPR003591	-
	Tsu08g01826	672	SMART	LRR_typ_2	147	171	IPR003591	-
	Tsu08g01826	672	SMART	LRR_typ_2	219	243	IPR003591	-
	Tsu08g01826	672	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	505	517	IPR008271	GO:0004672\|GO:0006468
	Tsu08g01826	672	ProSitePatterns	Protein kinases ATP-binding region signature.	392	414	IPR017441	GO:0005524
	Tsu08g01826	672	PANTHER	PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED	1	666	-	-
	Tsu08g01826	672	SUPERFAMILY	L domain-like	56	308	-	-
	Tsu08g01826	672	ProSiteProfiles	Protein kinase domain profile.	386	666	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu08g01826	672	CDD	STKc_IRAK	392	661	-	-
	Tsu08g01826	672	Pfam	Protein tyrosine and serine/threonine kinase	390	657	IPR001245	GO:0004672\|GO:0006468
	Tsu08g01826	672	Gene3D	Transferase(Phosphotransferase) domain 1	462	669	-	-
	Tsu08g01826	672	PANTHER	RECEPTOR-LIKE PROTEIN 55	1	666	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g01826	Tsu-Chr8	22296225	22298491	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g01826	1	666	Receptor kinase-like Gene Family	AT3G47570	37.679	5.88e-142	438

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Tsu08g01826		PK_Tyr_Ser-Thr	2.2e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g01826	-		K13420	mtr:MTR_8g465340	925.62