Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01824 ATGAGAAATCTTAGACATCGGAATTTGGTTAAGATTATCAGTGGTTGTTCGAGTCTTGATTTCAAAGCATTGGTGATGGACTTCATGTCAAATGGAAGTTTGGACAAATGCTTATATTCACATAAGTATTGTTTAAATTTCTTACAAAGGTTAAATATAATGATAGATATTGCATCTGCATTGGAATATCTTCATCATGGTTCTTCAATACATGTGGTTCATTCTGATCTAAAGCCAGCTAATGTGTTGTTGGATGAAAATATGGTTGCACATGTTAGTGATTTTGGTATTGCAAAGCTCATGGATAAAGGACAATCAAAAACACATACTGATACTTTGGCTACTATTGGATACCTTGCACCAGAGTATGGATCTAGTGGAATTGTTTCTGTCAAAGGAGATGTGTACAGCTATGGGATTATGCTAATGGAAATCTTCACGGGAAAAAAACCAACAGATGACATGTTTGTTGCAGAGCTAAATTTGATAACATGGATCAGTGGATCATTGCCTAATTCAATTATAAAGGTCCTGGATTCTAATTTAGTCCAACAGAATGGGGAACAAATTGATGACCTATTAACTTGCATGTCATCTATATTTGCTTTAGCCATGAATTGTTGCAAAGATTCACCTGAAGCAAGAATGAATATGGTAGATGTTACTGCGTCCCTAATCAAAATCAAGACTTCGGTTCTTGGATAA 705 0.3504 MRNLRHRNLVKIISGCSSLDFKALVMDFMSNGSLDKCLYSHKYCLNFLQRLNIMIDIASALEYLHHGSSIHVVHSDLKPANVLLDENMVAHVSDFGIAKLMDKGQSKTHTDTLATIGYLAPEYGSSGIVSVKGDVYSYGIMLMEIFTGKKPTDDMFVAELNLITWISGSLPNSIIKVLDSNLVQQNGEQIDDLLTCMSSIFALAMNCCKDSPEARMNMVDVTASLIKIKTSVLG 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01824 234 Gene3D Transferase(Phosphotransferase) domain 1 29 232 - -
Tsu08g01824 234 ProSiteProfiles Protein kinase domain profile. 1 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01824 234 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 1 232 - -
Tsu08g01824 234 SMART serkin_6 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01824 234 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 232 - -
Tsu08g01824 234 Pfam Protein tyrosine and serine/threonine kinase 1 224 IPR001245 GO:0004672|GO:0006468
Tsu08g01824 234 ProSitePatterns Serine/Threonine protein kinases active-site signature. 72 84 IPR008271 GO:0004672|GO:0006468
Tsu08g01824 234 SUPERFAMILY Protein kinase-like (PK-like) 1 225 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01824 Tsu-Chr8 22273519 22274379 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01824 1 229 Receptor kinase-like Gene Family AT3G47570 40.323 6.34e-60 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu08g01824 PK_Tyr_Ser-Thr 1.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01824 - K13420 mtr:MTR_0070s0020 387.497