Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01820 ATGCACAAGAACGATGGCATGATGCTAGCTGTAGATTTGCCCAATTTTTATCCTTGTACCATACCCGAGGAGATTGGCTATCTTCATAAACTTACGTTTCTAGCATTGGGAAACAATAGCTTTAGTGGATCTATTCCTTCCAAAACCTTCAACATGTCATCATTGATATCCTTGCTAATTGAACAAAATAACCTCTCAGGCATAATTCCAACAAATACGGGATATAACCTTCATAGCCTGCAACATCTAAACTTGtatgaaaacaattttgttGGAAATCTTCCAAAGAATATATTCAACGCTTCTAATctcattcaaattcaattgtttAACAATTCATTCAGTGGAACTCTGCCCATCAATGCTTTTGGAAATTTAAGGTTCCTCGAATACTTTGTCATAGATAACAATGATTTGACTATAGATGATTCTATTCAATTCTTTACTTCCTTGTCAAATTGTAGATATTTGAAATATCTAGAATTATCAGGAAATCATATATTACCCAATCTTCCTAAATCAATTGGAAACATATCCACACAATACTTTGATGCAAGTTCATGTGGAATTCAGGGTAATATTCCGGTAGAAGTTGGAAACATGAGCAACTTGCAATATTTTTCTCTAAAGGGGAATAACATAAATGGACCAATACCTGGTACATTTAAAGGGTTACAGAACCTTCAGGGATTGTACCTTAGCAACAATGGACTACAAGGATCATTTATTGAGGAGCTTTGTGAAATTGAGAGGTTGAGTGAgttgtatctagacaataataagCTTTCTGGAATTTTACCAACATGTTTGGGAAATCTGGCTTTTCTTAGAACATTGGACATAGGATCAAACAGTTTTAACTCTAACATACCTTCCTCACTTTGGAATCTCAGAGATATCTTAAAGCTAAATCTGTCCTCCAATGGTTTCATTGGTAATCTTTCACCTGAGATTGGGAATTTGCGGGCAATTACATTGTTAGATATAtcaagaaataatattttagggAACATTCCTACAACCATCACTGCCTTAATAAATTTGGAGGTTCTCTCTTTATCACATAACAAATTGTATGGGTCAATTCCCACATCACTTGGTGATATGGTAGGCTTGATCTCCTTGGATTTGTCCCAAAATATGCTGACAGGTGTTATTCCAAAATCCTTAGAATCACTTCGGGATCTTCAAAATATCAACTTCTCATATAATAGATTGCAAGGAGAGATTCCTGATGGtggaaatttcaaaaatttcacgGCTCAATCTTTTATGCATAATGAAGCACTCTGTGGTAATCCTAGCCTAAATGTACCTCTGTGTGATAATCAAGTTAAGAAaagttcaaaagaaaagaagctaTTACGCAAATGCATAATTCCCATAGTTGTGTCAACCATTTTGATTGTTGCTGGTATCATAATTTTGAAAGTTAAGAGAAGGAAAAAGGTTGAAAATACTCTTGAAAGGGGTTTATCTACTTTAGGAGCTCCAAGAAGAATTTCCTATTATGAACTTGTACATGCTACTGAGGGATTCAATGAGAGTAATTTACTTGGAAGAGGAAGTTTTGGCTCTGTGTATCAGGGGAAACTTCATGATGGTGAGATGATTGCAGTTAAAGTAATTGATTTGCAATCAGAGGCAAAATCAAGGAGCTTTGATGCAGAATGCAATGCAATGAAAGAACTACGACATCGAAATCTGGTTAAGATTATCAGTAGTTGTTCAAATCTTGATTTCAAAGCACTGGTGATGGAGTTCATGACAAATGGAAGTGTGGACAAATGGTTATATTCACATAACTATTGTTTAAATTTCTTACAAAGGTTAAATATAATGATAGATGTTGCATCTGCATTGGAGTATCTCCATCATGGTTCTTCGATATCTGTGGTTCATTGTGATCTAAAGCCTACCAATGTGTTGTTGGATGAAAATATGGTTGCACATGTTAGTGATTTTGGTATTGCCAAGCTCATGGATGAAGGACAATCTAAAACACATACTGAGACTTTGGCTACTATTGGATACCTTGCACCAGAGTATGGATCTAGTGGAATTGTTTCTATCAAAGGAGATGTGTACAGCTATGGCATTATGCTAATGGAAATCTTCACAAGAAAAAAACCAACTGATGATATGTTTGTTGCAGAACTAAGTTTGAAAACATGGATCAGTGGATCATTGCCTAATTCAAGTATGGAGGTCCTGGATTCTAATTTAGTCCAACAGAATGGGGAACAAATTGATGACATATTAACTTACATGTCATCTATTTTTGGTTTAGCCGTGAATTGTTGCGAAGATTCACCTGAAGCAAGAATGAATATGGCAGATGTTACTACGTCGCTaaccaaaatcaagactttGGTTCTTGGCGCAAATAGGGTCTAG 2397 0.3392 MHKNDGMMLAVDLPNFYPCTIPEEIGYLHKLTFLALGNNSFSGSIPSKTFNMSSLISLLIEQNNLSGIIPTNTGYNLHSLQHLNLYENNFVGNLPKNIFNASNLIQIQLFNNSFSGTLPINAFGNLRFLEYFVIDNNDLTIDDSIQFFTSLSNCRYLKYLELSGNHILPNLPKSIGNISTQYFDASSCGIQGNIPVEVGNMSNLQYFSLKGNNINGPIPGTFKGLQNLQGLYLSNNGLQGSFIEELCEIERLSELYLDNNKLSGILPTCLGNLAFLRTLDIGSNSFNSNIPSSLWNLRDILKLNLSSNGFIGNLSPEIGNLRAITLLDISRNNILGNIPTTITALINLEVLSLSHNKLYGSIPTSLGDMVGLISLDLSQNMLTGVIPKSLESLRDLQNINFSYNRLQGEIPDGGNFKNFTAQSFMHNEALCGNPSLNVPLCDNQVKKSSKEKKLLRKCIIPIVVSTILIVAGIIILKVKRRKKVENTLERGLSTLGAPRRISYYELVHATEGFNESNLLGRGSFGSVYQGKLHDGEMIAVKVIDLQSEAKSRSFDAECNAMKELRHRNLVKIISSCSNLDFKALVMEFMTNGSVDKWLYSHNYCLNFLQRLNIMIDVASALEYLHHGSSISVVHCDLKPTNVLLDENMVAHVSDFGIAKLMDEGQSKTHTETLATIGYLAPEYGSSGIVSIKGDVYSYGIMLMEIFTRKKPTDDMFVAELSLKTWISGSLPNSSMEVLDSNLVQQNGEQIDDILTYMSSIFGLAVNCCEDSPEARMNMADVTTSLTKIKTLVLGANRV 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01820 798 Pfam Leucine rich repeat 251 309 IPR001611 GO:0005515
Tsu08g01820 798 Pfam Leucine rich repeat 200 238 IPR001611 GO:0005515
Tsu08g01820 798 Pfam Leucine rich repeat 347 406 IPR001611 GO:0005515
Tsu08g01820 798 ProSiteProfiles Protein kinase domain profile. 513 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01820 798 ProSitePatterns Protein kinases ATP-binding region signature. 519 541 IPR017441 GO:0005524
Tsu08g01820 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Tsu08g01820 798 SUPERFAMILY L domain-like 15 240 - -
Tsu08g01820 798 SUPERFAMILY Protein kinase-like (PK-like) 494 785 IPR011009 -
Tsu08g01820 798 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 19 792 - -
Tsu08g01820 798 Gene3D Transferase(Phosphotransferase) domain 1 589 793 - -
Tsu08g01820 798 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 19 792 - -
Tsu08g01820 798 SMART LRR_typ_2 369 392 IPR003591 -
Tsu08g01820 798 SMART LRR_typ_2 77 101 IPR003591 -
Tsu08g01820 798 SMART LRR_typ_2 28 52 IPR003591 -
Tsu08g01820 798 SMART LRR_typ_2 345 368 IPR003591 -
Tsu08g01820 798 SMART LRR_typ_2 273 297 IPR003591 -
Tsu08g01820 798 SMART LRR_typ_2 201 224 IPR003591 -
Tsu08g01820 798 SMART LRR_typ_2 249 272 IPR003591 -
Tsu08g01820 798 Gene3D Ribonuclease Inhibitor 145 450 IPR032675 -
Tsu08g01820 798 Pfam Protein tyrosine and serine/threonine kinase 517 784 IPR001245 GO:0004672|GO:0006468
Tsu08g01820 798 Gene3D Phosphorylase Kinase; domain 1 496 588 - -
Tsu08g01820 798 Gene3D Ribonuclease Inhibitor 9 144 IPR032675 -
Tsu08g01820 798 SUPERFAMILY L domain-like 182 434 - -
Tsu08g01820 798 SMART serkin_6 513 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01820 Tsu-Chr8 22249046 22251704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01820 21 798 Receptor kinase-like Gene Family AT3G47570 36.712 1.03e-160 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu08g01820 PK_Tyr_Ser-Thr 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01820 - K13420 mtr:MTR_8g465340 1107.82