Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01817 ATGAAACTCAACATTGCTTCTTATCCATTTTCAGGTCCGATACCGGCCGAGATTGGCTATCTTAATCGACTTGAGATTTTACTATTGTCATTTAATAGATTTAGTGGAACTTTTCCGTCCAAACTCCTAAACATGTCATCACTGACAGTCTTGGAAATTGAACAAAATCACCTCTCAGGCATAATTCCATCAAATACGGGATATAGTCTTCCTAACTTGCAATATCTACACTTGAACGACAACAATTTTGTTGGAAATATTCCAAATACAATATTCAATTCTTCTAAGCTCATTGATTTTCAATTATATTTAGAATATCTAGAAATATCAGGGAATCATATACTTTCCAATCTTCCTAAGTCTATTGGAAACATAACTTGCCGAAAATTTATAGCAGATTCATGTGGAATTGTTGGTAATATTCCCTTAGAAGTTGGAAACATGAGCAACTTGTTACTTTTATCACTATCCAGGAATAACATAAATGGACCAATACCAGGTACATTAAAAGGGTTACAAAAACTTCAGAAATTGTACCTTGGCAAAAATAGTTTACAAGGATCATTTATTGAGGAGCTATGTCAAATTAAGAGATTGGAAGGGTTGTATCTTCAATATAATAAGATTTATGGAGTTTTACCAACATGTTTGGGAAATTTGACATTTCTTAGAATTTTGTACATAGAATCTAACCGTTTCAACTCTATGataccttcttctttttggagtCTCACAGATATCTTACAGATACATTTGTCCTCAAATAGTTTCATCGGTAATATTCCACTTGAGATTGGGAATTTGAGAGCAATTGTCCTATTAGATCTATCAAGAAATCAAATTTCAGGCAACATTCCTACAACCATCAGTTCCGTAAAAACATTGCAAAGTCTCTCTTTAGCACATAACAAACTGATGGGATCAATTCCAACATCACTTGGTGAAATGGTAAGCTTGACGTTCTTGGACTTGTCCCAAAATATGCTAACAGGTGTTATTCCAAAATCCTTAGAATCACTTTTGTATCTTCAAAACATCAACTTGTCATATAATAGATTACAAGGAGAGATTCCTGATGGtggaattttcaaaaatttcacgGCTCAATCTTTTATGCATAATGAAGCACTTTGTGGTAATCCTGGCCTAAATGTACCTCTGTGTGATAATCAAGTTAAGAAAAGTTCAACGAAAAATAAGTTGTTACTCAAATGCATCATTCCCATAGTTGTGTCAACCATTTTGATTGTTGCAAGCATCATAATTTTGAAAGTTAAGAAAAGGAAACAGGTTGAAAATACTGTTGAAAGGGGTTTATCAACTTTAGGAGCTCCAAGAAGAATATCGTATTATGAACTTGTGCAAGCAACTAATGGATTCAATGAGAGTAACTTACTTGGAATGGGGGGATTTGGCTCTGTGTATCAGGGGAAACTTCATGATGGTGAGATGATTGCAGTTAAAGTAATTGATTTGCAATCAGATGTAAAATCAAATAGCTTTGATAGAGAATGCAATGCAATGAAAAATCTTCGGCATCGGAATTTGGTTAAGATTATTAGTGGTTGTTCGAATCTTAATTTCAAAGCATTGGTGATGGAGTTCATGTCAAATGGAAGTGTGGACAAATGTTAG 1635 0.3309 MKLNIASYPFSGPIPAEIGYLNRLEILLLSFNRFSGTFPSKLLNMSSLTVLEIEQNHLSGIIPSNTGYSLPNLQYLHLNDNNFVGNIPNTIFNSSKLIDFQLYLEYLEISGNHILSNLPKSIGNITCRKFIADSCGIVGNIPLEVGNMSNLLLLSLSRNNINGPIPGTLKGLQKLQKLYLGKNSLQGSFIEELCQIKRLEGLYLQYNKIYGVLPTCLGNLTFLRILYIESNRFNSMIPSSFWSLTDILQIHLSSNSFIGNIPLEIGNLRAIVLLDLSRNQISGNIPTTISSVKTLQSLSLAHNKLMGSIPTSLGEMVSLTFLDLSQNMLTGVIPKSLESLLYLQNINLSYNRLQGEIPDGGIFKNFTAQSFMHNEALCGNPGLNVPLCDNQVKKSSTKNKLLLKCIIPIVVSTILIVASIIILKVKKRKQVENTVERGLSTLGAPRRISYYELVQATNGFNESNLLGMGGFGSVYQGKLHDGEMIAVKVIDLQSDVKSNSFDRECNAMKNLRHRNLVKIISGCSNLNFKALVMEFMSNGSVDKC 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01817 544 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 104 543 - -
Tsu08g01817 544 ProSitePatterns Protein kinases ATP-binding region signature. 466 488 IPR017441 GO:0005524
Tsu08g01817 544 SUPERFAMILY L domain-like 3 187 - -
Tsu08g01817 544 SMART LRR_typ_2 268 292 IPR003591 -
Tsu08g01817 544 SMART LRR_typ_2 45 69 IPR003591 -
Tsu08g01817 544 SMART LRR_typ_2 196 219 IPR003591 -
Tsu08g01817 544 SMART LRR_typ_2 148 171 IPR003591 -
Tsu08g01817 544 SMART LRR_typ_2 316 339 IPR003591 -
Tsu08g01817 544 SMART LRR_typ_2 220 243 IPR003591 -
Tsu08g01817 544 SMART LRR_typ_2 70 94 IPR003591 -
Tsu08g01817 544 ProSiteProfiles Protein kinase domain profile. 460 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01817 544 Pfam Leucine rich repeat 23 83 IPR001611 GO:0005515
Tsu08g01817 544 Pfam Leucine rich repeat 198 256 IPR001611 GO:0005515
Tsu08g01817 544 Pfam Leucine rich repeat 273 329 IPR001611 GO:0005515
Tsu08g01817 544 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 104 543 - -
Tsu08g01817 544 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 2 102 - -
Tsu08g01817 544 Pfam Protein kinase domain 461 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01817 544 Gene3D Phosphorylase Kinase; domain 1 443 535 - -
Tsu08g01817 544 SUPERFAMILY L domain-like 133 381 - -
Tsu08g01817 544 SUPERFAMILY Protein kinase-like (PK-like) 441 542 IPR011009 -
Tsu08g01817 544 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 102 - -
Tsu08g01817 544 Gene3D Ribonuclease Inhibitor 102 397 IPR032675 -
Tsu08g01817 544 Gene3D Ribonuclease Inhibitor 1 101 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01817 Tsu-Chr8 22173036 22174807 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01817 2 542 Receptor kinase-like Gene Family AT3G47570 35.050 2.92e-93 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu08g01817 Pkinase 4.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01817 - K13420 mtr:MTR_8g469650 733.406