Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01813 ATGTCATCACTGATAGCGTTGGAAATTGACCAAAATCACCTATCAGGCATAATTCCATCAAATATGGGATATAGTCTTCCTAACTTGCAATATCTATACTTGAACGACAACAATTTTGTTGGAAATATTCCAAATACAATATTCAATTCTTCTAAGCTCATTAATTTTCAATTGGATAACAATGCATTCAATGGAACTCTGCTCAATAATGGTTTTGGAAATTTAAGATATTTAAAATATCTAGACTTTTCAGGGAATCCTATACATTCCAATCTTCCTAAGTCTCTTGGAAATATAACTTGCGTAATGTTTGACGCAGATTCAAGTGGAATTGTTGGTAATATTCCCTTAGAAGTTGGAAACATGAGCAACATCCTATTGTTTAATGTATATGGGAATAATATAAATGGACCAATACCAGGTACATTCAAAGGGTTACAAAACCTTCAGAAATTGTACCTTGGCAAAAATAGTTTACAAGGATCATTTATTGAGGAGCTATGTCAAATAAAGATATTGGAAGAGTTGTCTCTTAATTATAATAAGATTTCTGGAGTTTTACCAACATGTTTGGGAAATTTGACTTTTCTTAGAAAATTATACATAGGATCTAACCGTTTCAGCTCTACTATACCTTCTTCTCTATGGAGTCTCACAGATATCCTAGAAATAGATTTGTCCTCTAATAGTTTCATTGGTAATCTTCCACTTGAGATTGGGAATTTAAGAGCAGTTGTAGTATTAGATGTATCAAGGAATCATATTTCAGGCAACATTCCTGCCACCATGAGTTCCATAAAAACTTTGCAGAATCTCTCCTTAGCACATAACAAACTGATGGGATCAATTCCCACATCATTTGGTGAAATGGTAAGCTTGATGTTCTTGGACTTCTCCCAAAATATGCTGACCGGTGTTATTCCAAGATCCTTAGAATCACTTTTGTATCTTCAAAACATCAACTTCTCATATAATAGATTACAAGGAGAGATTCCTGATGGtggaattttcaaaaaattcacaGCTCAATCTTTTTTGCATAATGAAGCACTTTGTGGTAATCCTCGCCTAAACGTGCCTCCGTGTGATAATCAAGTTAAGAAAAGTTCGACTGGAAAGAAGCTATTACTCAAATGCATAATTCCCATAGTTGTGTCAACCATTTTGATTGTTGCAGGGatcataattttaaaagttaagaaaaggaaaaagattgaaaatacTCTTGAAAGGGGTTTATCTACTTTAGGAGCTCCAAGAAGAATATCCTATTATGAACTTGTGCAAGCAACTAATGGATTCAATGAGAGTAACTTACTTGGAAAGGGGGGATTTGGATCTGTGTATCAGGGGAAGCTTCCTGATGGTGACATGATTGCAGTTAAAGTAATTGATTTGCACTCAGATGTAAAATCAAAAAGCTTTGATACAGAATGCAATGCAATGAAAAATCTTCGACATCGGAATTTGGTTAAGATTATCAGTGGCTGTTCGAATCTTGATTTCAAAGCACTGGTGATGGAGTTCATGACAAATGGAAGTGTGGACAAATGGTTATATTCACATAACTATTGTTTAAATTTCTTACAAAGGTTAAATATAATGATAGATGTTGCATCTGCATTAGAATATCTCCATCACGGTTCTTCAATACCTGTGGTTCAATGTGATCTAAAGCCAACTAATGTGTTGTTGGATGAAAATATGGTTGCACATGTTAGTGATTTTGGTATTGCCAAGCTCATGGATGAAGGACAATCTAAAACACATACAGAGACTTTGGCTACTATTGGATACCTTGCACCAGAGTATGGATCTAGTGGAATTGTTTCTATCAAAGGAGATGTATACAGCTATGGGATTATGCTAATGGAAATCTTCACAGGAAAAAAACCAACAGATGACATGTTCGTTGCAGAGCTAAGTTTGATAACATGGATCGGTGGATCATTGCCTAATTCAATTATAAAGGTCCTGGATTCTAATTTAGTCCAACAGAATGGGGAACAAATTGATGACCTATTAACTTACATGTCATCTATATTTGGTTTAGCCATGAATTGTTGCAAAGATTCACCTGAGGCAAGAATGAATATGGTAGATGTTACTGCGTCGCTAATGAAAATCAAGACTTCGGTTCTTGGCGCAAACAGGGTCTAG 2160 0.3435 MSSLIALEIDQNHLSGIIPSNMGYSLPNLQYLYLNDNNFVGNIPNTIFNSSKLINFQLDNNAFNGTLLNNGFGNLRYLKYLDFSGNPIHSNLPKSLGNITCVMFDADSSGIVGNIPLEVGNMSNILLFNVYGNNINGPIPGTFKGLQNLQKLYLGKNSLQGSFIEELCQIKILEELSLNYNKISGVLPTCLGNLTFLRKLYIGSNRFSSTIPSSLWSLTDILEIDLSSNSFIGNLPLEIGNLRAVVVLDVSRNHISGNIPATMSSIKTLQNLSLAHNKLMGSIPTSFGEMVSLMFLDFSQNMLTGVIPRSLESLLYLQNINFSYNRLQGEIPDGGIFKKFTAQSFLHNEALCGNPRLNVPPCDNQVKKSSTGKKLLLKCIIPIVVSTILIVAGIIILKVKKRKKIENTLERGLSTLGAPRRISYYELVQATNGFNESNLLGKGGFGSVYQGKLPDGDMIAVKVIDLHSDVKSKSFDTECNAMKNLRHRNLVKIISGCSNLDFKALVMEFMTNGSVDKWLYSHNYCLNFLQRLNIMIDVASALEYLHHGSSIPVVQCDLKPTNVLLDENMVAHVSDFGIAKLMDEGQSKTHTETLATIGYLAPEYGSSGIVSIKGDVYSYGIMLMEIFTGKKPTDDMFVAELSLITWIGGSLPNSIIKVLDSNLVQQNGEQIDDLLTYMSSIFGLAMNCCKDSPEARMNMVDVTASLMKIKTSVLGANRV 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01813 719 PANTHER RECEPTOR-LIKE PROTEIN 55 9 713 - -
Tsu08g01813 719 ProSiteProfiles Protein kinase domain profile. 434 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01813 719 Gene3D Transferase(Phosphotransferase) domain 1 510 716 - -
Tsu08g01813 719 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 9 713 - -
Tsu08g01813 719 SMART serkin_6 434 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01813 719 Pfam Protein tyrosine and serine/threonine kinase 438 704 IPR001245 GO:0004672|GO:0006468
Tsu08g01813 719 SMART LRR_typ_2 75 99 IPR003591 -
Tsu08g01813 719 SMART LRR_typ_2 290 313 IPR003591 -
Tsu08g01813 719 SMART LRR_typ_2 26 50 IPR003591 -
Tsu08g01813 719 SMART LRR_typ_2 170 193 IPR003591 -
Tsu08g01813 719 SMART LRR_typ_2 194 218 IPR003591 -
Tsu08g01813 719 Pfam Leucine rich repeat 132 183 IPR001611 GO:0005515
Tsu08g01813 719 SUPERFAMILY Protein kinase-like (PK-like) 415 706 IPR011009 -
Tsu08g01813 719 ProSitePatterns Protein kinases ATP-binding region signature. 440 462 IPR017441 GO:0005524
Tsu08g01813 719 SUPERFAMILY L domain-like 2 361 - -
Tsu08g01813 719 Gene3D Phosphorylase Kinase; domain 1 417 509 - -
Tsu08g01813 719 Gene3D Ribonuclease Inhibitor 1 103 IPR032675 -
Tsu08g01813 719 Gene3D Ribonuclease Inhibitor 104 371 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01813 Tsu-Chr8 22135500 22137919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01813 1 719 Receptor kinase-like Gene Family AT3G47570 35.604 5.35e-145 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu08g01813 PK_Tyr_Ser-Thr 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01813 - K13420 mtr:MTR_8g465340 1015.37