Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01762 ATGGGAGATGGAGCTATGGAAACTGCACAAAATTCCGAAATGACCGGAAATGATTCTAAGATGAAGGGATCTAAGCTAATACTGATAGATCTTGCATCAGCTGCTATGGATGAGCTGATCAAGATGGCTGAACCAGACTCCCATCTCTGGATCAAGAGTCCGGAGAGTGGGAATGAAGTGCTTAACCACAACGAGTACGAAAGGACTTGTTCTCCTTTTAACACTCCGAAACTAAATGGTTTTGTAACTGAAGCTACAAGAGAAACTGTGCTGTTATGCACCAACGCTGCTGCTCTTGTCGAAGCATTTCTTGATGCGGATCGGTGGGCGGAGATTTTTCCGTGTATGATTGTTGAAGCTGAAACACTAGAAGTGTTATCTTATGGAATTGATGGAACCAGAAATGGATTTATGCAACTGATGCATGCTGAGATTCAATTGCCTACTCCGTTGGTCTCGATTCGAGAATATAGTTTCATCAGGTATTGCAAGCAGCATGCTGAAGGTAAGTGGGCTGTGCTTGATGTTTCGATCGATTTTGATCGTAATGGTCCCAACCGAAACCCTAACATGAGTTGTAAGAGGCTTCCGTCTGGTTGTATTATGGAGGATATGCCTGATGGTTTGTCCAAGATTACTTGGGTGGATCATTCTCAATATGATGAGAGTGCTTTCCACCAAACCTGTCGTCAATTGGTTAACTCCGGCTTCGCATTTGGTGCTCATCGATGGGTTGCAACTCTCCAGAGGCACTGTGAAGCCCTTGGTATCCTCCTGTCTGGCGTACCAGCTGATAACCCTTCAGCAATAAGCCAATCTGCCAAGAGAAGCATGACAAAGCTCGCACAGCGGATGTCCGATTACTTCTGGTCTGGAGTTTGTCCTTCGTCAGCTAGCAAGTGGGACATCCTTCACATTAGCAACGACAACATGAGAATCATGTCCCAGAAAATTTTGGATGCCTCTGGTGAGAATCCTAGCATTGTGCTAAGTGCCGCAACTTCTGTTTGGATGCCAGTGTCGCGGCAAAGGGTGTTTGATTTCCTCCGTGATGCACAAATGAGAGGTGAGTGGGATGTTTTGTGCAATGGTGGATCAATGGAGGAGATGATCCATATTGCTAAAGGAGAAGAAATTGGAAATTCAGTTTCTATCCTTCGTGCTGATAATGTaaATGGTGGAGATTCTTTATTTATTCCTCTTTTGCCTTCCGGCTTTTCAATTCTTCCGGATGGCCATTCAAGTGACGGTAGCAGCAGTGGCAGCGACAATGACAATGGCGGATGCTTGCTCACTGTTGGATTACAAATGGTGCTGACCAGCCTTGGATCAAGTAAGCTCACAACTGAATCGGTTGATACCGTTAATGATCTAATCGCATGCACTATTCAGAAGGTCAAGGATGCTCTTGGAGTTGTATGA 1422 0.4501 MGDGAMETAQNSEMTGNDSKMKGSKLILIDLASAAMDELIKMAEPDSHLWIKSPESGNEVLNHNEYERTCSPFNTPKLNGFVTEATRETVLLCTNAAALVEAFLDADRWAEIFPCMIVEAETLEVLSYGIDGTRNGFMQLMHAEIQLPTPLVSIREYSFIRYCKQHAEGKWAVLDVSIDFDRNGPNRNPNMSCKRLPSGCIMEDMPDGLSKITWVDHSQYDESAFHQTCRQLVNSGFAFGAHRWVATLQRHCEALGILLSGVPADNPSAISQSAKRSMTKLAQRMSDYFWSGVCPSSASKWDILHISNDNMRIMSQKILDASGENPSIVLSAATSVWMPVSRQRVFDFLRDAQMRGEWDVLCNGGSMEEMIHIAKGEEIGNSVSILRADNVNGGDSLFIPLLPSGFSILPDGHSSDGSSSGSDNDNGGCLLTVGLQMVLTSLGSSKLTTESVDTVNDLIACTIQKVKDALGVV 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01762 473 ProSiteProfiles START domain profile. 21 257 IPR002913 GO:0008289
Tsu08g01762 473 SUPERFAMILY Bet v1-like 280 378 - -
Tsu08g01762 473 SUPERFAMILY Bet v1-like 28 255 - -
Tsu08g01762 473 SMART START_1 30 254 IPR002913 GO:0008289
Tsu08g01762 473 Gene3D - 29 255 IPR023393 -
Tsu08g01762 473 Pfam START domain 31 253 IPR002913 GO:0008289
Tsu08g01762 473 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 391 471 IPR042160 -
Tsu08g01762 473 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 12 392 IPR042160 -
Tsu08g01762 473 CDD START_ArGLABRA2_like 25 253 - -
Tsu08g01762 473 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 391 471 - -
Tsu08g01762 473 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 12 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01762 Tsu-Chr8 21433256 21437462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01762 29 470 Homeobox Transcription Factor Family AT3G61150 48.269 8.55e-159 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01762 K09338 - gmx:100785102 519.62