Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01751 ATGGCCTTGCTTTGTGGTTCACCATCCGTCACGTTCCCTTCATCTACATTCCCTCATCACAACAATTCAACAACTAAATTTTCCTTTGTTTCTTCCCAATTCCCACTTTCAAagctttcattttcttcatcttcttcttcaattcgtACCCATTTCTCTCCATCTTTCATTGTTCGTTCTCAGCAGGACACTTCATTGGTTGAAGAAGATCCACGGTTCATCTGCCTTGAACCTGAGCCCCGATTTCAAGGCCCGGACATTTGGAACACAACCTGGTATCCAAAAGCTTCCGATCATGTCAATACAGAAAAAACATGGTATATTGTTGATGCTACAGATAAAATTCTTGGAAGACTGGCATCAACCATTGCAAATCACATCCGAGGGAAAAATCTAGTGACGTATACACCCAGTGTGGATATGGGTGCATTTGTAATTGTGATAAATGCAGAAAAGGTTGCTGTAAGCGGGAAAAAGAGGACCCAAAAGCTTTATCGGAGGCACTCAGGTCGACCTGGTGGTATGACAGTCGAGACATTTGACCAGCTGCAGAACAGAATTCCTGAAAGAATTATTGAACACGCTGTTCGTGGCATGCTTCCCAAAGGGAGGCTTGGCAGGACTCTATTCACACGTCTGAAGGTTTATAGCGGCCCAGATCATCCACATGAAGCGCAACAGCCCATTGATTTGCCGATTAGGGATAAGAGAATACAGTTGCAGAGATAA 729 0.4211 MALLCGSPSVTFPSSTFPHHNNSTTKFSFVSSQFPLSKLSFSSSSSSIRTHFSPSFIVRSQQDTSLVEEDPRFICLEPEPRFQGPDIWNTTWYPKASDHVNTEKTWYIVDATDKILGRLASTIANHIRGKNLVTYTPSVDMGAFVIVINAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQNRIPERIIEHAVRGMLPKGRLGRTLFTRLKVYSGPDHPHEAQQPIDLPIRDKRIQLQR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01751 242 Pfam Ribosomal protein L13 104 222 IPR005822 GO:0003735|GO:0005840|GO:0006412
Tsu08g01751 242 Gene3D Ribosomal protein L13 95 238 IPR036899 GO:0003735|GO:0005840|GO:0006412
Tsu08g01751 242 PANTHER RIBOSOMAL PROTEIN L13 60 242 IPR005822 GO:0003735|GO:0005840|GO:0006412
Tsu08g01751 242 TIGRFAM rplM_bact: ribosomal protein uL13 100 231 IPR005823 GO:0003735|GO:0005840|GO:0006412
Tsu08g01751 242 Hamap 50S ribosomal protein L13 [rplM]. 106 241 IPR005822 GO:0003735|GO:0005840|GO:0006412
Tsu08g01751 242 CDD Ribosomal_L13 106 219 IPR005822 GO:0003735|GO:0005840|GO:0006412
Tsu08g01751 242 PANTHER BNAA02G18970D PROTEIN 60 242 - -
Tsu08g01751 242 SUPERFAMILY Ribosomal protein L13 101 233 IPR036899 GO:0003735|GO:0005840|GO:0006412
Tsu08g01751 242 ProSitePatterns Ribosomal protein L13 signature. 196 218 IPR023563 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01751 108 241 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 30.370 3.61e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01751 K02871 - gmx:100305981 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01751 08 21267126 21273068 Tsu08g01751 08 21267126 21273068 ECH