Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu08g01741 | ATGGATCTCACCACAAACCTTAACGACCTTCCACCCAACAAGAGAATCAGActcattcaacaacaacaacagaaacaacaacaacaacatagtCCATGCTCACTCTTACCCACCAAAAAACGCAAAGAATCTCGAAACACATCACTTTTTCACAATCCACCATCAACACCATCACCATCTATTTATTCTCTACCCACCAAAAAAAGAGTCTGCGCTCTCCAACCTCACTTTTACCACCCCCACCCCCACAACTCCCCAAACAACGCCGTTCCACATATCGATCTCAATGTCGAATACAACCCTGCTCTTCACTCACCAACCCCATCCGAGAAACAATCTCAAAAACAggacaacaacaataacaacgaTGACCAAGATGTTGCTGATGATGATGGGATTTTATGCTGTGTGTGCCAGAGCACAGATGCTAATGCTGAGGACCCAATTGTTTTCTGTGACGGTTGCAATTTAATGGTCCATGCTTCCTGCTATGGAAACCCATTAACAAAAGAAATCCCAGAAGGGGATTGGTTTTGTGAACGGTGTCGTTTTATTAAAAACGACACTGATCTGATTCGTTGCTCCCTCTGTCCTAAAACAGAGGGAGCAATGAAACAAACAATAGATGGAAAGTGGGCACACTTGGTGTGTGCTTTACTTGTGCCTGAAGTGTTTTTTGTAGATCCAGAAGGAAGAGATGGGATTGATTGTTCCAAAGTTCCAAAAAAGAGATGGTTGGAAAAGTGCTATGTTTGTGATTGTTGTGATGGGTGTGCTTTGGTTTGTTCTGAACCTAAATGTGGTTTGGGTTTTCATATTACTTGTGGAATTAAAGAGGATCTTTGTATTGAGTATAAAGAAGGGAAAAAAGGTGCTACTGTTGTTGCTGGTTTTTGCAAATCTCATTCTCAACTCTGGGAAAAGCAACAGGTATCAGGGAAATACAAGATTGTTGCAGTTGAAGATAAGAAGTAG | 975 | 0.3918 | MDLTTNLNDLPPNKRIRLIQQQQQKQQQQHSPCSLLPTKKRKESRNTSLFHNPPSTPSPSIYSLPTKKRVCALQPHFYHPHPHNSPNNAVPHIDLNVEYNPALHSPTPSEKQSQKQDNNNNNDDQDVADDDGILCCVCQSTDANAEDPIVFCDGCNLMVHASCYGNPLTKEIPEGDWFCERCRFIKNDTDLIRCSLCPKTEGAMKQTIDGKWAHLVCALLVPEVFFVDPEGRDGIDCSKVPKKRWLEKCYVCDCCDGCALVCSEPKCGLGFHITCGIKEDLCIEYKEGKKGATVVAGFCKSHSQLWEKQQVSGKYKIVAVEDKK | 324 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu08g01741 | 324 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 189 | IPR013083 | - | |
| Tsu08g01741 | 324 | MobiDBLite | consensus disorder prediction | 99 | 124 | - | - | |
| Tsu08g01741 | 324 | MobiDBLite | consensus disorder prediction | 21 | 35 | - | - | |
| Tsu08g01741 | 324 | MobiDBLite | consensus disorder prediction | 21 | 63 | - | - | |
| Tsu08g01741 | 324 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 119 | 320 | - | - | |
| Tsu08g01741 | 324 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 6 | 118 | - | - | |
| Tsu08g01741 | 324 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 190 | 305 | IPR013083 | - | |
| Tsu08g01741 | 324 | SMART | PHD_3 | 248 | 303 | IPR001965 | - | |
| Tsu08g01741 | 324 | SMART | PHD_3 | 134 | 183 | IPR001965 | - | |
| Tsu08g01741 | 324 | ProSiteProfiles | Zinc finger PHD-type profile. | 132 | 185 | IPR019787 | - | |
| Tsu08g01741 | 324 | SUPERFAMILY | FYVE/PHD zinc finger | 122 | 199 | IPR011011 | - | |
| Tsu08g01741 | 324 | Pfam | PHD-finger | 135 | 183 | IPR019787 | - | |
| Tsu08g01741 | 324 | Pfam | PHD-zinc-finger like domain | 193 | 302 | - | - | |
| Tsu08g01741 | 324 | PANTHER | PHD FINGER PROTEINS | 119 | 320 | - | - | |
| Tsu08g01741 | 324 | MobiDBLite | consensus disorder prediction | 48 | 63 | - | - | |
| Tsu08g01741 | 324 | CDD | PHD_BRPF_JADE_like | 134 | 182 | - | - | |
| Tsu08g01741 | 324 | MobiDBLite | consensus disorder prediction | 102 | 121 | - | - | |
| Tsu08g01741 | 324 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 191 | 303 | IPR034732 | - | |
| Tsu08g01741 | 324 | PANTHER | PHD FINGER PROTEINS | 6 | 118 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu08g01741 | 21 | 324 | C2H2 Transcription Factor Family | AT3G14740 | 48.457 | 7.09e-104 | 306 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Tsu08g01741 | zf-HC5HC2H_2 | 8.4e-25 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu08g01741 | K11380 | - | gmx:100802652 | 392.889 |