Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01721 ATGACTTGTTTTGCTTTCTTATTTGGTAAGAAAGTGTCTTCTGATGTAAGACGAGATCCTGTAATCGATGAAGGACTTTCCGGCATTCGAATAAAAGTTTATACTTACAAAGAACTAAAAGTTGCCTCTGACAATTTCAGCCCGGCTAATAAAATCGGGGAGGGTGGTTTCGGTTCTGTTTATAAGGGAGTGCTAAAAGGTGGGAAGTTAGCCGCTATAAAAGTGCTTTCAACTGAATCAAAGCAAGGGGTGAAGGAATTCTTGACCGAGATTAATGTGATTTCAGAAATACAGCATGAAAATTTGGTTATACTATATGGATGTTGTGTGGAAGGAGATCACCGAATATTAGTCTACAATTACCTTGAGAACAATAGCCTTGCACAAACCCTTCTAGCTGGAGGTCACAGTAATATCTACTTCGATTGGCAAACACGGTGTAAGATATGCATTGGAGTTGCACGTGGACTCGCGTTTCTTCACGAGGAAGTACAACCCCATATTGTTCACAGGGATATAAAAGCAAGCAATATTCTCCTTGACAAGGATCTCACGCCTAAGATTTCAGATTTTGGTCTTGCAAAACTTATTCCGTCATACATGACTCATGTCAGCACACGTGTAGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCAATAAGGGGTCAGTTGACACGCAAAGCAGATATTTACAGTTTTGGGGTCCTCCTTGTAGAGATAGTCAGTGGGAGATCCAACACAAATACAAGATTACCAATTGCAGATCAATATATTCTAGAAACGGTATGTGTGTCctattttctcttttgtgtTCAAGCATCTTTCACTATTTTAAAATGGACAGTATGA 852 0.3897 MTCFAFLFGKKVSSDVRRDPVIDEGLSGIRIKVYTYKELKVASDNFSPANKIGEGGFGSVYKGVLKGGKLAAIKVLSTESKQGVKEFLTEINVISEIQHENLVILYGCCVEGDHRILVYNYLENNSLAQTLLAGGHSNIYFDWQTRCKICIGVARGLAFLHEEVQPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIVSGRSNTNTRLPIADQYILETVCVSYFLFCVQASFTILKWTV 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01721 283 SMART serkin_6 46 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01721 283 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 263 - -
Tsu08g01721 283 Gene3D Phosphorylase Kinase; domain 1 21 121 - -
Tsu08g01721 283 ProSiteProfiles Protein kinase domain profile. 46 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01721 283 SUPERFAMILY Protein kinase-like (PK-like) 27 256 IPR011009 -
Tsu08g01721 283 Pfam Protein kinase domain 49 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01721 283 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Tsu08g01721 283 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Tsu08g01721 283 Gene3D Transferase(Phosphotransferase) domain 1 122 267 - -
Tsu08g01721 283 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 2 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01721 Tsu-Chr8 20841425 20845287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01721 5 251 Receptor kinase-like Gene Family AT1G53430 59.036 6.28e-94 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g01721 Pkinase 4.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01721 - - gmx:100800503 441.039