Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01713 atggcTGCAGCCTCTAATCAATCCTCAACCACTTCAGAAAGTATTTCCCACAAAGTTTGCGAAGAAGAGAAAGCCGTCAACAACAACGAGGTGACAATGAAGGGGAAGGAAGTTATAATATCGGAGCAACATGAACCTTCAAAAAGCAATACCAATTTACCTTTTGATTTCGTCAAGCTCTCTAAAGATGATTCGATTCCTAGGTCGAATATGCAAGAACATAACTTTTTCACCCCTTCGAAGGGCTTGGGGGCGAGTTCATCTTTATTCCCTCGGGCTAATAATAAGCCCAACAATGAAGAGagcacaaaagaaaaatattctgTTTCGAGAAGTAATTTCTCTTGCAACTTTTGCAAGAGACATTTTTCTTCTCCGCAAGCTTTAGGAGGGCATCAAAATGTTCATAAGCGTGAACGCACACTTGCAAAGCATCATCAAGAGATTCAAAATGGTTTTGGTACCCCTCATTATCCTTTTCCTTACTACACAAGTTATCCGAGTCTTTCTTCATCTTATTATAGTATTGGATCTTATAATAAAGCACTAGGAATTAGGATGGACTCCATGATTCATAAGCCAAGCTTTTCGAGGACTCCACCTCCTTATAAATTCGGTTCTACTCCTATGTGGACGCCAATGCAAGAGATGATCAAAAACTTTTCTTCACTTGATAGATTGAAGATTGAGAGTCTTAATgcaaagaatgaaaacagtGCAATTCCAATTGGGAGGAAGAGTAATATGATGAAATTAGATGTTGGAGAGTCTTCTATAAATGTTGATACGAAGTCAAATTCAGATGTAGACAAGTCAACTGTGGTTGTCATGGATAGTGAAGCCTCCGATTCTGAATCTACTGGGCTTGATTTGTCACTTAAGCTTTGA 888 0.3705 MAAASNQSSTTSESISHKVCEEEKAVNNNEVTMKGKEVIISEQHEPSKSNTNLPFDFVKLSKDDSIPRSNMQEHNFFTPSKGLGASSSLFPRANNKPNNEESTKEKYSVSRSNFSCNFCKRHFSSPQALGGHQNVHKRERTLAKHHQEIQNGFGTPHYPFPYYTSYPSLSSSYYSIGSYNKALGIRMDSMIHKPSFSRTPPPYKFGSTPMWTPMQEMIKNFSSLDRLKIESLNAKNENSAIPIGRKSNMMKLDVGESSINVDTKSNSDVDKSTVVVMDSEASDSESTGLDLSLKL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01713 295 Gene3D Classic Zinc Finger 95 154 - -
Tsu08g01713 295 PANTHER ZINC FINGER PROTEIN JAGGED 4 295 IPR045320 GO:0003700
Tsu08g01713 295 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 4 295 - -
Tsu08g01713 295 MobiDBLite consensus disorder prediction 1 15 - -
Tsu08g01713 295 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Tsu08g01713 295 MobiDBLite consensus disorder prediction 87 106 - -
Tsu08g01713 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Tsu08g01713 295 MobiDBLite consensus disorder prediction 1 28 - -
Tsu08g01713 295 SUPERFAMILY beta-beta-alpha zinc fingers 111 142 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01713 Tsu-Chr8 20719236 20720123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01713 42 195 C2H2 Transcription Factor Family AT5G10970 36.076 1.56e-17 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu08g01713 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01713 - - cam:101494832 246.128