Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01710 ATGTCCTTAGATTGTAATGGCAGAGGTCCAGACGGGattaattttggtttcattAAAGATTTTTGGTCCGAGCTTCAGGGGGACATCATGCGCTTTATCTCGGAGTTCCATCGTAATGGCAGACTGACTAAAGGTTTAAATTCCACTTTCATTATTTTGATCCTAAAATTTGACAGTCCCCAACGACTGAATGATTTTCGGCCCATTTCGCTAGTGGGATGCCTCTACAAGATTCTGGCAAAGGTTTTAGCGAACATGTTGCGTCTAATGATAGGTAGTTTGATTTTTGAGTCTCATATGGCGTTCGTAAAGGATAGGCATATCCTCGATGGTATTCTCATTGCgaatgaggtggtggatgaggcgCGCAGGTCTAAGAGGGAGCTGTTGTTATTTAAGGTGGATTTTGAGAAACATGTGGTGGAAATGGATAAAGGAATGCGTTTGTACGGCAACATCGCCATGATTGAGCGTAATCTTTTCACTGGGTATAGTGTCAGTGAGCTTGAGCCGATCTCAATCTCGCACCTCCAGTTTGCCGACGACACGCTTCTGTTGGGGGTTAAAAGTTGGGTGAATGTTCGTGCTCTGCAGGCTGTCCTTGTGCTGTTCGAGACTATGTCAGGCCTGaaagttaattttaataaaagcatGTTAGGTGAGGTTGCGTCTGCTTTGCGTTGTAAAGTGGGAAAGGTACAGTCGTCAGATAGTTGGCAGTGGCAGTCTGATCTTGATAAATGTTACTCTGTCCGCAGTGCATATCATATTCTGACGTCTCAGGATTTGGTTACTCTTCATGAGCGGAAGGTCTCACATGGCACCCacagCTGTTTGGTTGACTTTTCACAAGCTCAAACTGCAAACGCCACTACAGATCCTTCTGAAGCAAGAGTTCTAAATTCAATATTTAGCAAATGGAGCATAAAAGCGGATCAAACTCAATGGAACATAAGCGGTGAGCTATGTAGTGGAAGAGCCATTGATAGCAGCGCCACCATCGATGACACCACCTTTAACCCTTTCATCAAATGTGATTGTTCCTTTAACAACAAGACTACTTGCCGCATCACCGCACTGAAAGTTTATGCATTGGATGTGGTTGGTGAAATTCCACCAGAGCTATGGACTCTTGTTTATCTCACCAATTTGAACCTTGGCCAAAATTACTTGAAGGGGTCTCTACCTCCGGCAATTGGAAATCTGACTCGTATGCAATACATGTCCATTGGCATCAATGCTTTGTCAGGAGAGCTTCCAAAGGAGTTGGGAGATCTTACTCGGTTGATAGTATTGGGTTTTGGGTCTAATAACTTCTCAGGATCTTTGCCATCTGAACTTGGGAAGTTGGTAAAACTACAACAACTCTACATGGATAGTTCTGGAATCAGTGGTCCAATTCCACCCACATTTACAAACCTTAATAATTTGGTGACAGTATGGGCTTCAGACACAGAACTCACAGGCAGAATACCCGACTTCATAGGAAATTGGTCTAAGCTTCAATCCTTGAGGTTTGAGGGTAATTCCTTTGAAGGTCCAATACCCTCGtcattttccaatttgacaTCTTTGACAGAACTGAGAATAAGTGGTCTATCTAATGGAAGCTCCTCATTGGAAGTAGTAAGGAATATGAAGTCTTTGACAACCTTAGAATTGAGGAATAACAATGTTACTGGTTCTATTCCTCCCTCCTTAggagaatttcaaaatttgaccgAGCTGGACTTAAGCTTCAATAAAATCTCAGGACAAATTCCTGgatcaattttcaatttgagTTTGCTGTCTTCCTTGTTTCTTGGAAATAACACACTTAGCGGACTTCTCCCTCAGCAAAAAAGTTCATCTCTTAAAAACATAGACTTGTCATACAATGACCTATCTGGAAGCCTCCCATCTTGGATAAACGAACCAAATTTACAACTGAACATTGTTGCCAACAACTTCACAATAGTAAATTCAAATATCGGTGGTTTGCCTACTGGGATCGACTGTCTCCAGAAAAATTTTCCATGCAATCGTGGTGCTGCACGATATTCTGACTTTGCGATCAAGTGTGGTGGTCCTCAAATTAGAGCTACAGATGGAATTGTGTATGAAACAGACAATGAGACACTTGGTCCTGCTACATACTTTGTTACAGATACAAATAGATGGGCCGTTAGTAATGTTGGATTATTTACCGGGACGAACAATCCTCTATACAAAAGTTTTGTTTCTAATCAGTTCACTGGGACTGTGAACTCAGAGATTTTTCAAACTTCTCGGCTCTCTGCATCATCATTAAGATATTACGGATTGGGATTAGAAAATGGATTTTACAACATTACCCTCCAATTTGCGGAAACAGCCATTCTTGATTCTGCCACATGGAAAAGCCTTGGGAGACGGGTCTTTGATATTTATATCCAGGGGACTCGTGTTTTGAAGGATTTTGACATACAAAGAGAAGCTGGTGGTGTGTCTTATAGAGCTGTTCAAAAGAAATTTAGGTTTCAAGTGAAAGAAAACTATCTCGAGATCCATCTTTTTTGGGCCGGAAAAGGGACTTGCTGCATACCTGGCCAAGGTACTTATGGACCCTTGATTCAAGCCATCAATGCTATCCCAGATTTCATACCTACTGTCAGCAATAAACCTCCCAGCAGTAAAAAGAATAGAGCTGGTCTAATCATTGGAATTGTTGTTGGTGTTGGAGTTGTTTGCTTTCTTGTAGTTTTTGCCATTTTCTATATCAAGCGGAGAAGAAAATTCTATGATGACAATGAAGAACTTTTAGGCATTGATATAATGCCAAACACTTTCAGCTACTCCGAGTTAAAAAATGCTACAAGCGACTTCAATCGTGACAATAAACTTGGAGAGGGAGGCTTTGGACCTGTTTATAAGGGGAAACTTAACGATGGAAGAGATGTGGCTGTGAAACAATTATCTATAGGATCCCATCAAGGAAAGAGTCAGTTTGTAGCCGAGATTGCTACTATATCTGCTGTGCAACACCGTAATCTTGTCAAATTATACGGATGTTGTATTGATGGGAGCAAACGACTACTAGTGTACGAGTATTTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGCAGGAAATGATTTATTCCTCAATTGGTCAACCCGTTATGATATTTGTATGGGTGTTGCAAGAGGATTGACATATTTACATGAAGAGTCACGGCTCCGAATTGTGCACCGTGATGTGAAGGCTAGTAATATTCTTCTTGACTCTGAGCTTGTCCCAAAAATATCTGATTTTGGATTGGCTAAATtatatgatgataaaaaaaccCATATAAGCACCCGTGTTGCCGGGACAATTGGATATCTTGCACCGGAGTATGCCATGCGCGGACACCTCACAGAGAAAGCGGATGTTTTTTCATTTGGTGTTGTGGCCCTCGAGTTAGTTAGTGGGAGGCCAAATTCTGATACAAGTTTGGAAGGAGAAAAGATGTATCTTCTAGAATGGGCTTGGCAACTTCATGAAAGGAACTGTACAAATGATCTGATAGATCCTAAACTATCAGAATTCAACAAGGAAGAAGTCCAACGCCTTGTAGGAATAGCACTTTTGTGCACTCAAACATCACCAACTTTACGGCCATCAATGTCGCGTGTGGTGGCAATGCTTTCAGGAGATATTGAAGTCAGCACTGTAACATCACGACCCGGATACTTGACTGACTGGAAATTTGACGATGTTAGCAGCATCATGACTGACATTTCAATGAAGGAATCAGATACAAGTAATTACAATTCAACAATAAGTACCAGCATAGTTGGTGGACCAGATATTCATACACTTAATGATCCTTCTAAATCCATCCTTCATGGGACTATTAGAGAGGGTCCCGGGAAAGTAGCGGCTAAAACATTTTATGATGTTGAATTTCCAAAAGGTCATGTTGGAATCAAGAGCTTTGATGCTGAACTAGTCGATGAAGAAGGAAATTCCGTACCATTATATGAAGCATACCTACATCATTGGTTTGCTATAAAATAccaagaaaaaaattggaatatgtCAAAAATAATCCATGAGAATCCTATGGAAGGTGCCATTTACATTAGAAATGACGGAATGTGTAATACTTATATTCTTCCAATTTATTGGGGTTTGGGAGCTGAATCACGaggaacaaaatcaaaaattcCAGATCCTTATGCTGTAGAACATGGCAACCCTTCTAAAATTCCATTTGGATACCTAGAAAAATGGCTCCTAAATCTCTTGATCATTGATACACGCGGTACAAAAGATAGAGAAGGTTGTACTGAATGTAGGTGTGATCATTTCAATTTgccaaagaatttttataatgtcACAATTGGCATTGACGGAAAACCACTGGGATCAAGTTATAAAGGAGGACTCCTTTGTTGCCAAGATAATTTACAGTGCAAATTGCAAAAGGGTTTTGAAGCACCTACGAGAAAGCTTGCTTTGAGATACAAAATAACATGGGTAGAGTTTACAGTTCCACCAACTAATGATAGAAACAACGCTCCTCATATTGAGAAAGCAAACATCCCAATCGAAAGAGGCGGTTATCTTATCTACGGCACCGCTCATATGCATACAGGTGCCATTAATGCAACCTTATATGGACAGGATGGAAGAATTTTGTATACTTCAAAACCAACTTATGGAAAAGGAAAGGAACCAGGAAATGAGAAAGGCTATGTTGTCGGGATGTCAGGAAGTTATCCAGAATTAGGTTCAACCAAGATTAAGGATGGTGAAATTGTGACTATAGAAACAAGATACGAAAGTGGCTTTCGCACTGGAGCTATGGGACATATGTACATCTATTTAGCAGACCGATTACCAGAAAATACAAATATACCTACTCTAGCCTAg 4881 0.3913 MSLDCNGRGPDGINFGFIKDFWSELQGDIMRFISEFHRNGRLTKGLNSTFIILILKFDSPQRLNDFRPISLVGCLYKILAKVLANMLRLMIGSLIFESHMAFVKDRHILDGILIANEVVDEARRSKRELLLFKVDFEKHVVEMDKGMRLYGNIAMIERNLFTGYSVSELEPISISHLQFADDTLLLGVKSWVNVRALQAVLVLFETMSGLKVNFNKSMLGEVASALRCKVGKVQSSDSWQWQSDLDKCYSVRSAYHILTSQDLVTLHERKVSHGTHSCLVDFSQAQTANATTDPSEARVLNSIFSKWSIKADQTQWNISGELCSGRAIDSSATIDDTTFNPFIKCDCSFNNKTTCRITALKVYALDVVGEIPPELWTLVYLTNLNLGQNYLKGSLPPAIGNLTRMQYMSIGINALSGELPKELGDLTRLIVLGFGSNNFSGSLPSELGKLVKLQQLYMDSSGISGPIPPTFTNLNNLVTVWASDTELTGRIPDFIGNWSKLQSLRFEGNSFEGPIPSSFSNLTSLTELRISGLSNGSSSLEVVRNMKSLTTLELRNNNVTGSIPPSLGEFQNLTELDLSFNKISGQIPGSIFNLSLLSSLFLGNNTLSGLLPQQKSSSLKNIDLSYNDLSGSLPSWINEPNLQLNIVANNFTIVNSNIGGLPTGIDCLQKNFPCNRGAARYSDFAIKCGGPQIRATDGIVYETDNETLGPATYFVTDTNRWAVSNVGLFTGTNNPLYKSFVSNQFTGTVNSEIFQTSRLSASSLRYYGLGLENGFYNITLQFAETAILDSATWKSLGRRVFDIYIQGTRVLKDFDIQREAGGVSYRAVQKKFRFQVKENYLEIHLFWAGKGTCCIPGQGTYGPLIQAINAIPDFIPTVSNKPPSSKKNRAGLIIGIVVGVGVVCFLVVFAIFYIKRRRKFYDDNEELLGIDIMPNTFSYSELKNATSDFNRDNKLGEGGFGPVYKGKLNDGRDVAVKQLSIGSHQGKSQFVAEIATISAVQHRNLVKLYGCCIDGSKRLLVYEYLENKSLDQALFAGNDLFLNWSTRYDICMGVARGLTYLHEESRLRIVHRDVKASNILLDSELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDTSLEGEKMYLLEWAWQLHERNCTNDLIDPKLSEFNKEEVQRLVGIALLCTQTSPTLRPSMSRVVAMLSGDIEVSTVTSRPGYLTDWKFDDVSSIMTDISMKESDTSNYNSTISTSIVGGPDIHTLNDPSKSILHGTIREGPGKVAAKTFYDVEFPKGHVGIKSFDAELVDEEGNSVPLYEAYLHHWFAIKYQEKNWNMSKIIHENPMEGAIYIRNDGMCNTYILPIYWGLGAESRGTKSKIPDPYAVEHGNPSKIPFGYLEKWLLNLLIIDTRGTKDREGCTECRCDHFNLPKNFYNVTIGIDGKPLGSSYKGGLLCCQDNLQCKLQKGFEAPTRKLALRYKITWVEFTVPPTNDRNNAPHIEKANIPIERGGYLIYGTAHMHTGAINATLYGQDGRILYTSKPTYGKGKEPGNEKGYVVGMSGSYPELGSTKIKDGEIVTIETRYESGFRTGAMGHMYIYLADRLPENTNIPTLA 1626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01710 1626 Gene3D Ribonuclease Inhibitor 538 659 IPR032675 -
Tsu08g01710 1626 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 375 1266 - -
Tsu08g01710 1626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1069 1081 IPR008271 GO:0004672|GO:0006468
Tsu08g01710 1626 Pfam Stress up-regulated Nod 19 1287 1498 IPR011692 -
Tsu08g01710 1626 Pfam Stress up-regulated Nod 19 1498 1614 IPR011692 -
Tsu08g01710 1626 Gene3D - 683 872 - -
Tsu08g01710 1626 SUPERFAMILY L domain-like 355 655 - -
Tsu08g01710 1626 ProSiteProfiles Leucine-rich repeat profile. 572 594 IPR001611 GO:0005515
Tsu08g01710 1626 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 375 1266 - -
Tsu08g01710 1626 Pfam Malectin domain 683 868 IPR021720 -
Tsu08g01710 1626 CDD STKc_IRAK 955 1217 - -
Tsu08g01710 1626 Gene3D Phosphorylase Kinase; domain 1 923 1024 - -
Tsu08g01710 1626 Pfam Protein tyrosine and serine/threonine kinase 952 1217 IPR001245 GO:0004672|GO:0006468
Tsu08g01710 1626 CDD RT_nLTR_like 49 217 - -
Tsu08g01710 1626 Pfam Leucine Rich repeats (2 copies) 547 584 IPR025875 -
Tsu08g01710 1626 Gene3D Transferase(Phosphotransferase) domain 1 1025 1228 - -
Tsu08g01710 1626 SMART serkin_6 949 1217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01710 1626 ProSiteProfiles Protein kinase domain profile. 949 1223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01710 1626 SUPERFAMILY Protein kinase-like (PK-like) 933 1242 IPR011009 -
Tsu08g01710 1626 Gene3D Ribonuclease Inhibitor 293 537 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01710 Tsu-Chr8 20677973 20700536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01710 405 1290 Receptor kinase-like Gene Family AT1G56120 63.258 0.0 1150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g01710 PK_Tyr_Ser-Thr 4.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01710 - - mtr:MTR_8g445800 1678.69